Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02152 ATGTCGTCTCCGCCGCCAGAGACCTCTCTTACGCCGGAGACATCTCCTATGCCTCCTGCCACCATCAATGGCACCTCCTCCACTCCATCGCCGGAGCTCTCCGTTACTCAGACGCCGGATGCAATTTTTCCGTCGTCGCAGGTACCGGACAACGACGGGTTGGCGAGGAGTACATTGAACGGAATAATCATAGGGGTAGTGTTAGGTTCAGTAGGTATGCTTATCGTGGGGGGTATTTTCGTCATTTTTTATAGAAATCGGAAAAGGAGAAAACACCGGAACAGCTACTCCGATGCTCCTCCGCCACCGCCACAACAAAAAGCTGATGGGGTTGGCGGCATTTTTCATCATTGGCAAGGCACTGTTCCTCCAACAACAGATGGTAAAACAGGCTTGCCTCCCAAGCCTCCTGGGGTTCCTGCACCCCCTGTTCATTCTTCAACCACTAGCTCTAGTTTGGGGTCTGAGAAGCCACACATTTCCCCATCTCCTGGCCTTTCCTTGGCATTATCACAGAGCACTTTTACATATGAGGAATTGGCAGTGGCGACAGATGGATTCTCCAAATCAAATCTTCTTGGTCAAGGTGGTTTTGGCTATGTCCACAAAGGAGTTCTCCCAAATGGAAAAACTGTTGCAGTTAAGCAGCAGAAATCTGAGAGTAGACAGGGGGAGCGTGAGTTCTGTGCGGAAGTTGAGGTCATTAGCCGTGTGCATCACAGACATCTTGTTTCCCTTGTTGGATACTGCATCTCAGATGGCCAGAGGATGCTTGTCTATGAGTATGTGCCGAATGGAACACTAGAATTTCATTTGCATGGAAAGGACAGACCAACTATGGACTGGTCAACTAGGATGAAGATTGCCACAGGATCTGCAAAAGGATTGGCATATCTGCATGAGGACTGTACGCCCAAAATCATACACCGTGACATCAAGGCATCTAACATCCTTCTTGATGATAATTTTGAGGCTAAGGTTGCGGATTTTGGACTTGCCAAATTTTCATCAGACACAGATACCCATGTTTCTACTAGAGTGATGGGAACTTTTGGATACTTGGCTCCGGAATATGCTGCTAGTGGGAAACTCACTGAAAAGTCAGATGTTTTCTCCTTTGGTGTTGTGCTTTTAGAGTTGATTACTGGACGAAAACCTGTTGATAAAACCCAGTCCTTCATAGATGACAGCATGGTTGAATGGGCAAGACCTTTACTGTCCCAAGCTTTGGAAAATGGCAACTTTAATGGACTTGTTGATCCAAGGTTGGAAGCGAATTACAATCATGATGAGATGATTCGCATGACTGCTTGTGCTGCAAGTTGTGTACGCCATTCAGCCAGGCTTCGGCCTCGAATGAGCCAGGTTGTTAGAGCTCTAGAAGGAAATCTTTCACTAGATGATCTAAATGAGGGGAACAAACCTGGGCACAGCAGAGTTTTTGGTTCATTTGAGAGTTCAAGTTATGACAGTGCCCAATACAGTGAAGACCTAAAGAAGTTCAAGAAGTTGGCACTGGAAAGCCAAGAACAAGGCATTAGTGAGTACAGTGGGCCCAGCAGCGAGTATGGTCAACATCCATCTGTCTCGACCAGTTCAGGCTTGCAAAATACACAAGAGATGGAAATGGAGAATGTAAATGGTAGTAGCAACCATGGTTCTGGGGTGAGCTCTTGA 1677 0.4681 MSSPPPETSLTPETSPMPPATINGTSSTPSPELSVTQTPDAIFPSSQVPDNDGLARSTLNGIIIGVVLGSVGMLIVGGIFVIFYRNRKRRKHRNSYSDAPPPPPQQKADGVGGIFHHWQGTVPPTTDGKTGLPPKPPGVPAPPVHSSTTSSSLGSEKPHISPSPGLSLALSQSTFTYEELAVATDGFSKSNLLGQGGFGYVHKGVLPNGKTVAVKQQKSESRQGEREFCAEVEVISRVHHRHLVSLVGYCISDGQRMLVYEYVPNGTLEFHLHGKDRPTMDWSTRMKIATGSAKGLAYLHEDCTPKIIHRDIKASNILLDDNFEAKVADFGLAKFSSDTDTHVSTRVMGTFGYLAPEYAASGKLTEKSDVFSFGVVLLELITGRKPVDKTQSFIDDSMVEWARPLLSQALENGNFNGLVDPRLEANYNHDEMIRMTACAASCVRHSARLRPRMSQVVRALEGNLSLDDLNEGNKPGHSRVFGSFESSSYDSAQYSEDLKKFKKLALESQEQGISEYSGPSSEYGQHPSVSTSSGLQNTQEMEMENVNGSSNHGSGVSS* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02152 558 MobiDBLite consensus disorder prediction 129 143 - -
Rops4g02152 558 SMART serkin_6 187 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g02152 558 Pfam Protein tyrosine and serine/threonine kinase 190 460 IPR001245 GO:0004672|GO:0006468
Rops4g02152 558 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 76 509 IPR047117 -
Rops4g02152 558 ProSiteProfiles Protein kinase domain profile. 187 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g02152 558 ProSitePatterns Serine/Threonine protein kinases active-site signature. 307 319 IPR008271 GO:0004672|GO:0006468
Rops4g02152 558 MobiDBLite consensus disorder prediction 14 36 - -
Rops4g02152 558 FunFam Proline-rich receptor-like protein kinase PERK8 159 262 - -
Rops4g02152 558 Gene3D Transferase(Phosphotransferase) domain 1 263 474 - -
Rops4g02152 558 FunFam Proline-rich receptor-like protein kinase PERK1 263 471 - -
Rops4g02152 558 MobiDBLite consensus disorder prediction 1 36 - -
Rops4g02152 558 MobiDBLite consensus disorder prediction 509 558 - -
Rops4g02152 558 Gene3D Phosphorylase Kinase; domain 1 155 262 - -
Rops4g02152 558 MobiDBLite consensus disorder prediction 144 158 - -
Rops4g02152 558 MobiDBLite consensus disorder prediction 510 558 - -
Rops4g02152 558 MobiDBLite consensus disorder prediction 119 165 - -
Rops4g02152 558 ProSitePatterns Protein kinases ATP-binding region signature. 193 215 IPR017441 GO:0005524
Rops4g02152 558 SUPERFAMILY Protein kinase-like (PK-like) 161 460 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02152 Rops-Chr4 47978979 47983655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02152 17 521 Trihelix Transcription Factor Family AT1G70460 51.158 4.31e-163 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Rops4g02152 PK_Tyr_Ser-Thr 8.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02152 - - ccaj:109808169 777.704