Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02146 ATGGGCGTGGACATGTCCAACAAACCATCTAATACTTCTCCCACCAAAGACTTGTTTTCCTCTCCAGCTCTCTCTCTTAGCCTTGCTGGGATTTTTCGCCATGCTGGAGAGGCGGTGGAGTCATCAAGCATGGAGGGAAGTAGGAGAGAATATACTGTTGAGATTAGTAGTGAGAACTCAGGGCCCTTGAGATCCAAGTCTGATGATGATTTTGAAGGAGAAGGTGAGCATGAAGATGATGATGGTGATGGAGATGGAGATAAGAACAACAACAAGAAGAAGAGGAAGAAGTATCATAGACACACTGTTGAGCAAATCAGAGAAATGGAAGCGCTTTTCAAAGAATCACCACATCCTGATGAAAAGCAGAGGCAACAACTAAGCAAGCAATTAGGCCTTGCTCCAAGGCAAGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAATCAAGGCAATACAAGAGCGCCATGAAAATTCATTGTTGAAGACAGAATTAGAGAAACTAAGGAAGGAAAATAAGGCCATGAGAGAGACCATAAACAAATCTTGTTGCCCCAATTGTGGCATGGCCACAACTAGCAGTGATGGTTCAATGTCCACTGAAGAAAAACAACTTCGTATTGAAAATGCCAAACTCAAAGCTGAGGTAGAGAAGCTTAAAGCAGCTTTGGGGAAATACCCACCAGGGACAACGTCCCCTTCAAGTTCTGCTGGCCATGATGATGAAGAGAATAGAAGCTCTTTGGATTTTTACACTGGAATTTTTGGGCTTGAGAAGTCAAGGATAATGGAGATAGTAAACCAAGCAAGTGAGGAGCTTATAAAGATGGCAAATATGGGTGAACCACTATGGCTTCGTAGTGTTGAGACAGGTCGTGAAATACTTAACTATGATGAATATGTGAAGGAGTTCAAAGTTGAAAATTCATGCACTTCAACTCCAAAGAGATTCATTGAAGCCTCAAGAGACACTGCAGTTGTTTTTGTGGATCTCCCAAGGCTCATCCAAACTTTTTTAGATGTGAATCAATGGAAGGAAATGTTCCCATGCTTGATATCAAAGGCAGCAACTGTTGATGTTATATGCAATGGAGAAGGTTCTAATAGGAATGGTGCGGTGCAATTGATGTTTGCTGAGTTGCAAATGCTCACTCCAATGGGGCCCACCAGAGAAGTGTATTTTGTCAGGTGCTGCAAACAGTTAGGTGCTGAACAGTGGGCAATCATTGATGTATCCATAGACAAAGTAGAAGACAACATTGATGCATCCCTTGTGAAATGCAGAAAACGCCCATCTGGATGCATTATTGAGGATAAGTCAAATGGTCATTGCAAGGTAATCTGGGTGGAGCATTTGGAATGCCAGAAGAGCACAGTTCATACAATGTATAGAGCCATTGTCAACAGTGGTCTAGCCTTTGGAGCAAGGCACTGGATTGCAACACTGCAACTTCAATGCGAACGTCAGGTTTTCTACATGGCAACAAATGTTCCCACGAAGGATTCAACTGGTGTTACCACATTGGCTGGGAGGAAAAGCATTTTGAAGTTGGCACAAAGAATGACATGGAGTTTCTGCCATGCAGTTGGTGCATCAAGCTTCCACACATGGACCAAAGTCACAAGTAAAACGGGAGAAGACATAAGGATTAGTTCTAGGAAGAACTTGAATGATCCTGGTGAACCTCTTGGGGTTATCTTGACAGCTGTTTCTTCTATATGGCTTCCTGTCTCTCCTAATGTTCTGTTTGATTTCTTGAGAGATGAAGCTCATAGGACTGAGTGGGATATCATGGCAAGTGGTGGGTCAGTGCAGTCTATCTCAAATTTAGCTAAAGGTAAAGACCGAGGCAATGTTGTAAACATCCAAAAAATACAATCAAAAGAAGATAGTACGTGGATACTACAAGATAGCTGCACAAGTGCTTATGAGTCAATGGTGGTATATGCTACAGTGGACTTCACTGGTATACAGTCTGTGCTTACAGGATGTGATTCAAGTAATCTTGCCATATTGCCATCAGGATTCTCAATTCTTCCTGATGGGGTTGAGGTAAGGCCATTGGTGATTACTTCAAGGGAGGAAGAAAAATGCACAGAAGGAGGGTCTTTATTTACAATGGCATTTCAGATGCTTGCCAATGCTTCCCCAACAGCCAAGTTAACCATGGAATCTGTGGATTCGGTCAAGAATTTGGTGTCTTGTACATTGAGAAATATCAAAACAAGTTTACAATGTGAAGATGATTAG 2250 0.4222 MGVDMSNKPSNTSPTKDLFSSPALSLSLAGIFRHAGEAVESSSMEGSRREYTVEISSENSGPLRSKSDDDFEGEGEHEDDDGDGDGDKNNNKKKRKKYHRHTVEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKTELEKLRKENKAMRETINKSCCPNCGMATTSSDGSMSTEEKQLRIENAKLKAEVEKLKAALGKYPPGTTSPSSSAGHDDEENRSSLDFYTGIFGLEKSRIMEIVNQASEELIKMANMGEPLWLRSVETGREILNYDEYVKEFKVENSCTSTPKRFIEASRDTAVVFVDLPRLIQTFLDVNQWKEMFPCLISKAATVDVICNGEGSNRNGAVQLMFAELQMLTPMGPTREVYFVRCCKQLGAEQWAIIDVSIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKSTVHTMYRAIVNSGLAFGARHWIATLQLQCERQVFYMATNVPTKDSTGVTTLAGRKSILKLAQRMTWSFCHAVGASSFHTWTKVTSKTGEDIRISSRKNLNDPGEPLGVILTAVSSIWLPVSPNVLFDFLRDEAHRTEWDIMASGGSVQSISNLAKGKDRGNVVNIQKIQSKEDSTWILQDSCTSAYESMVVYATVDFTGIQSVLTGCDSSNLAILPSGFSILPDGVEVRPLVITSREEEKCTEGGSLFTMAFQMLANASPTAKLTMESVDSVKNLVSCTLRNIKTSLQCEDD* 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02146 749 FunFam Homeobox-leucine zipper protein GLABRA 2 264 487 - -
Rops4g02146 749 Pfam START domain 265 488 IPR002913 GO:0008289
Rops4g02146 749 SUPERFAMILY Bet v1-like 257 488 - -
Rops4g02146 749 MobiDBLite consensus disorder prediction 1 20 - -
Rops4g02146 749 Coils Coil 202 222 - -
Rops4g02146 749 CDD START_ArGLABRA2_like 259 487 - -
Rops4g02146 749 CDD homeodomain 99 150 IPR001356 GO:0003677
Rops4g02146 749 Coils Coil 151 178 - -
Rops4g02146 749 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 92 745 IPR042160 -
Rops4g02146 749 ProSitePatterns 'Homeobox' domain signature. 127 150 IPR017970 GO:0000981|GO:0006355
Rops4g02146 749 MobiDBLite consensus disorder prediction 37 101 - -
Rops4g02146 749 Gene3D - 83 166 - -
Rops4g02146 749 ProSiteProfiles 'Homeobox' domain profile. 92 152 IPR001356 GO:0003677
Rops4g02146 749 MobiDBLite consensus disorder prediction 222 245 - -
Rops4g02146 749 SUPERFAMILY Homeodomain-like 84 153 IPR009057 -
Rops4g02146 749 ProSiteProfiles START domain profile. 255 491 IPR002913 GO:0008289
Rops4g02146 749 Pfam Homeodomain 95 150 IPR001356 GO:0003677
Rops4g02146 749 SUPERFAMILY Bet v1-like 518 738 - -
Rops4g02146 749 Gene3D - 300 486 IPR023393 -
Rops4g02146 749 SMART START_1 264 488 IPR002913 GO:0008289
Rops4g02146 749 SMART HOX_1 94 156 IPR001356 GO:0003677
Rops4g02146 749 MobiDBLite consensus disorder prediction 45 62 - -
Rops4g02146 749 FunFam Homeobox-leucine zipper protein HDG1 81 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02146 Rops-Chr4 47948799 47954065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02146 55 748 Homeobox Transcription Factor Family AT1G79840 65.292 0.0 929
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops4g02146 START 1e-53 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02146 K09338 - gmx:100806193 1209.9