Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02142 ATGACTCTCTCTTTTAAAGCTTTCAACAAACACCTTCCTCTCCATAAACCCCCTTCCTCTTATGCTTTCATAGCTACCTCTTTCCCCACTCTCAAACCCCTCCCTACTAAGCGCCCCGGGATTATTGTCTCTCAGTTTCGCTCTTACTCATCATCTCCATCTGCAACGTTTATGGAGGTCTTCAAAGCAATTGCCAAGCAAGAACTCTCAGCTCATGACGGTGTTGCTATCAGAGCCGATCAGAAGAGTTATAGTTACAAGCAACTCATCTCATCAGCACAGAAGATATCTAATCTCTTGTGTGGAAGTGATGTGAAAGGAAATCTTGGTGGAGCTCGAATAGGAATTGTAGCCAAACCCTCTGCTGAATTTGTTGCTGGAGTTCTTGCAACTTGGTTTAGTGGAGGTGTTGCTGTGCCACTTGCAATCAGCTACCCAGAAGTAGAGCTCTTGTATGTGATTAATAATTCGGATGTGTCTGCAATACTGAGTACTGAAGATCATAGTGAATTAATGCAAAGCATTGCCAATAAAACCTCTTCTCAGTTTTTTCATCTTCCAACTGTTCCCAATAAGTCTTCAGAGAAAAGCAGAGACGAACATTCACAGAATGGGGAAATTGATGCAGACAAAATTTTACTGGAGAATATTGGAAGATCAAGTGAAGATCCAGCTCTGATTTTGTACACTAGCGGGACGACAGGTAAACCTAAGGGAGTTGTTCATACACACAGAAGCATCATTGCCCAGGTCCAAACCTTGACAAAAGCGTGGGGGTACACATCTGCTGACAAGTTTCTGCATTATGTGATTTGGGATATCTTTATGATGTCAATCCTTAACATATGTGATATACATGTTCATGGGCTTTTCAATGGTTTACTGGCCCCTCTCTACGCAGGTTCCACGGTTGAGTTTTTGCCAAAATTTAGTGTGAGGGGAATTTGGCAGAGATGGCGTGAGTCATACCCAACTGAAGGATCCAAGGCCGATGATGCTATAACTGTATTCACTGGAGTTCCAACTATGTACACCCGATTAATACAAGGTTATCGAGCAATGGATCCTGAACTACAAGCTGCTTCAGCATCTGCTTCAAGGAATTTGCGTCTTATGATGTGTGGGTCCTCTGCACTTCCTCAACCTGTTATGCAAGAATGGGAAGCAATCACTGGGCATCGCTTATTAGAGCGGTATGGCATGACTGAATTTGTCATGGCTTTGTCAAATCCACTGAAAGGTGAGCGCAAGGCAGGCACCGTAGGCAAACCATTCCCTGGTGTACAGGTCAAGATTCTTGCAGATGAGGAGACTGGGAATGAAAAAACTGGAGTGGGTGAGCTTTGCATAAAAAGCCCTTCACTGTTTAAAGATTATTGGAAACTTCCTGAGGTAACGAAGGAATCATTTACAGATGATGGATTCTTTAAAACTGGAGATGCAGTTACCACAGATGAAGATGGATATTACATCATTCTAGGACGTACTAATGCTGATATAATCAAAGCTGGTGGCTATAAACTGTCTGCGTTAGAAATTGAATCAGTTATAATAGAGCATCCAGCTGTCTCAGAATGTTGTGTTTTGGGCTTACCAGACAAAGATTATGGAGAAATTGTGGGTGCAATTATTGTGCCAGACACTGATGTTAAACGAAAGCGTGATGCAGAATCAAAGCCTGCTCTAAGCCTAGAAGAATTATCCACCTGGGCCAAGGACAAAATTGCACCTTACAAGATACCAACTCTACTAATCCTGTGGGACTCACTCCCTCGCAATGCAATGGGGAAGGTAAACAAAAAAGAGCTGAAGAAGTTGCTGGTTTCAGAACAGTAA 1836 0.427 MTLSFKAFNKHLPLHKPPSSYAFIATSFPTLKPLPTKRPGIIVSQFRSYSSSPSATFMEVFKAIAKQELSAHDGVAIRADQKSYSYKQLISSAQKISNLLCGSDVKGNLGGARIGIVAKPSAEFVAGVLATWFSGGVAVPLAISYPEVELLYVINNSDVSAILSTEDHSELMQSIANKTSSQFFHLPTVPNKSSEKSRDEHSQNGEIDADKILLENIGRSSEDPALILYTSGTTGKPKGVVHTHRSIIAQVQTLTKAWGYTSADKFLHYVIWDIFMMSILNICDIHVHGLFNGLLAPLYAGSTVEFLPKFSVRGIWQRWRESYPTEGSKADDAITVFTGVPTMYTRLIQGYRAMDPELQAASASASRNLRLMMCGSSALPQPVMQEWEAITGHRLLERYGMTEFVMALSNPLKGERKAGTVGKPFPGVQVKILADEETGNEKTGVGELCIKSPSLFKDYWKLPEVTKESFTDDGFFKTGDAVTTDEDGYYIILGRTNADIIKAGGYKLSALEIESVIIEHPAVSECCVLGLPDKDYGEIVGAIIVPDTDVKRKRDAESKPALSLEELSTWAKDKIAPYKIPTLLILWDSLPRNAMGKVNKKELKKLLVSEQ* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02142 611 Gene3D - 498 610 IPR045851 -
Rops4g02142 611 FunFam Acyl-CoA synthetase family member 3 66 495 - -
Rops4g02142 611 Gene3D - 61 495 IPR042099 -
Rops4g02142 611 CDD MCS 73 605 - -
Rops4g02142 611 PANTHER ACYL-COA SYNTHETASE 56 605 - -
Rops4g02142 611 Pfam AMP-binding enzyme 72 501 IPR000873 -
Rops4g02142 611 ProSitePatterns Putative AMP-binding domain signature. 227 238 IPR020845 -
Rops4g02142 611 SUPERFAMILY Acetyl-CoA synthetase-like 44 609 - -
Rops4g02142 611 Pfam AMP-binding enzyme C-terminal domain 512 597 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02142 Rops-Chr4 47910708 47919114 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02142 222 607 Monolignol Biosynthesis Gene Families AT4G19010 27.411 1.65e-38 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02142 K18660 - gmx:100813324 954.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02142 4 47910708 47919114 Rops4g02142 4 47910708 47919114 ECH