Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02135 ATGATGGCTGGGAATCCTAACTGGTGGAGTATACATCCACTATCTTTGGTCCCTTCACAGTATGGGATTGGATCTACTTCAATTCCTTTTAATTCTTTAACAGAAAATCCAGAACCCCCTCAGTCATTGAGTCAACTTCTTTTCACCGGTTTACCAGGAGAAGAAGAGAGAGTAGCATTTAGTCATTTTCAATCAAAAAAATTTGAAAACTGGGATGAACATATTCTTAATCCATCCTCCATAGTTCCTATGGTTGATATAATAAAGCAAGAGGTTTCCCAAAGTGGCAATTTATATCGCCATGGGCATGAGGAATTTCAGGTTTCTGGAGCTGGGTCATCTTGGTCAAATATGATGCCAGTTTCTTCCCCTAGGTCAAGTGTCACTAACTTGAGTAGTAATAATTTATTGGATTTCACTTATAACAAGGTAGATCATAGGAAGACCCAATTACCAGATCACACATCTGAGTGTAATAGCAAAGCCACTGCTGGAGGAGTCTGTAAGAAGAATAAGGGCCAGCCATCTTCAAGCCAACCACCTCTGAAGGTGAGAAAGGAGAAGCTAGGTGATAGAATAACATCCCTTCACCAACTAGTTTCTCCGTTTGGAAAGACTGATACAGCTTCTGTCTTGTTAGAAGCCATTGGATATATCAGATTCCTGCAGGGTCAAATTGAGGCACTCAGTTCTCCTTACATGGGCAATGGATCAAAAAACATAAGGAATCAACAATCTGTACATGGAGAAAGAAATTCTGTATTTCCTGAGGACCCCGGTCAGCTGGTGAATGATACAGGCCTAAAAAGAAAGGGAGCTCCAAACCAGGATGCAAAAGATAAGCCAAAAGACTTGAAGAGTAGAGGGTTGTGCTTGGTTCCTGTCTCTAATACCCAACATGTTGGAAATGAAAATGGAGCTGATTATTGGCCACCTGCATATGGCAGCGGATTTTAA 957 0.4107 MMAGNPNWWSIHPLSLVPSQYGIGSTSIPFNSLTENPEPPQSLSQLLFTGLPGEEERVAFSHFQSKKFENWDEHILNPSSIVPMVDIIKQEVSQSGNLYRHGHEEFQVSGAGSSWSNMMPVSSPRSSVTNLSSNNLLDFTYNKVDHRKTQLPDHTSECNSKATAGGVCKKNKGQPSSSQPPLKVRKEKLGDRITSLHQLVSPFGKTDTASVLLEAIGYIRFLQGQIEALSSPYMGNGSKNIRNQQSVHGERNSVFPEDPGQLVNDTGLKRKGAPNQDAKDKPKDLKSRGLCLVPVSNTQHVGNENGADYWPPAYGSGF* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02135 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 183 234 IPR036638 GO:0046983
Rops4g02135 318 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 55 300 - -
Rops4g02135 318 MobiDBLite consensus disorder prediction 272 286 - -
Rops4g02135 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 222 IPR011598 GO:0046983
Rops4g02135 318 MobiDBLite consensus disorder prediction 239 286 - -
Rops4g02135 318 MobiDBLite consensus disorder prediction 150 183 - -
Rops4g02135 318 FunFam Transcription factor bHLH123 family 183 246 - -
Rops4g02135 318 CDD bHLH_AtbHLH_like 183 230 IPR045239 -
Rops4g02135 318 Gene3D - 183 245 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02135 Rops-Chr4 47850576 47853561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02135 53 262 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 43.162 2.12e-43 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02135 - - gmx:100802121 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02135 4 47850576 47853561 Rops4g02135 4 47850576 47853561 ECH