Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02131 ATGTCTAGACCATTAGAACATGATTACATATGTTTAGTAGAGACTCCATCCATGGAAAGAAGCTGTGACAAGATTTCCTCTTCAATTTCCTCCACCCTCTCTTCTGAGGATGAAAAGAGCTCATCACTGAACTTTAAGGAGACAGAACTCAGGCTTGGCTTGCCTGGTTGTGAGTCTCCTGAGAAAAAATCAGCAGTTGGGATCTCTTTGTTTGGAAAAGATTTGCAGAGCAAGCACAATGCATGTTCTGTCTCAAGCTCTTTGAAGAACCTTGTGGCTGGGGTTAAGAGGGGCTTCTCTGATGCCATTGATGATTCTTCCTCTGGGAAATGGCTTTTCTCTGAGGTTGATATGGGAAAAGGAGCTGCTTTATTCTCCCCTAGAGGTGAGAAAACTGGGAGTGTTGGGAAGCCTCTTGTTGTTTTAGAGGGTAAAAATAACACCCAACAGGCCAATACCCCTGTACAAAGCATCAAAGAAGTTGGTATAGTTCCTCAATCTGAGAAGATGGCTCAGGAAAAGAAGCCTCAGGTTGCTGCAACAAATGAGCATAGTAGTGTTCATGCTGCCAAGGCACAAGTTGTGGGGTGGCCTCCAATTCGATCTTTTCGAAAGAACACCATGGCTTCTAATTTGGCTAAGAATAGTAAGGAAGGTGAAGAGAAATCAGGAGTTAGTTGTGTGTATGTGAAGGTGAGCATGGATGGTGCCCCTTATCTCAGAAAGGTTGATCTCAAGACCTACACCAATTACATTGAACTTTCTTCAGCTCTTGAGAAAATGTTCAGCTGCTTTACCATTGGTCAATGCAGTTCCGGTGATCTTACTGGGAAAGATGGCTTAAGTGAGAGCGCTTTCAGGGATCTTCTTCTTGGCTCTGAATATGTTGTTACATATGAAGATAAGGATGGAGATTGGATGCTTGTGGGTGATGTCCCTTGGGAGATGTTCACTGAGTCGTGTAAGAGACTAAGGATAATGAAAGGCTCTGAGGCAATTGGGCTAGCTCCAAAGGCCATGGAAAAATCTAAGAGCCAAAACTAG 1044 0.4368 MSRPLEHDYICLVETPSMERSCDKISSSISSTLSSEDEKSSSLNFKETELRLGLPGCESPEKKSAVGISLFGKDLQSKHNACSVSSSLKNLVAGVKRGFSDAIDDSSSGKWLFSEVDMGKGAALFSPRGEKTGSVGKPLVVLEGKNNTQQANTPVQSIKEVGIVPQSEKMAQEKKPQVAATNEHSSVHAAKAQVVGWPPIRSFRKNTMASNLAKNSKEGEEKSGVSCVYVKVSMDGAPYLRKVDLKTYTNYIELSSALEKMFSCFTIGQCSSGDLTGKDGLSESAFRDLLLGSEYVVTYEDKDGDWMLVGDVPWEMFTESCKRLRIMKGSEAIGLAPKAMEKSKSQN* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02131 347 FunFam Auxin-responsive protein 222 339 - -
Rops4g02131 347 SUPERFAMILY CAD & PB1 domains 227 328 - -
Rops4g02131 347 ProSiteProfiles PB1 domain profile. 227 329 IPR000270 GO:0005515
Rops4g02131 347 Gene3D - 221 341 - -
Rops4g02131 347 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 42 334 IPR003311 GO:0005634|GO:0006355
Rops4g02131 347 Pfam AUX/IAA family 47 338 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02131 Rops-Chr4 47818079 47821521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02131 215 340 B3 DNA Binding Superfamily AT2G46530 30.159 3.91e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Rops4g02131 AUX_IAA 4.9e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02131 K14484 - jre:109000692 485.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02131 4 47818079 47821521 Rops4g02131 4 47818079 47821521 ECH