Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02130 ATGGCTGGCATAGCATTAGGACGCTTTGATGATTCTTTCAGTTTGGGCTCAATTAAGGCCTATATTGCTGAGTTCATCTCAACCTTGCTCTTTGTTTTTGCTGGTGTTGGTTCAGCCATAGCCTATGGTAAGTTGACATCAGATGCAGCTCTTGATCCCTCTGGGTTAGTAGCAGTTGCTGTTTGCCATGGTTTTGCTCTCTTTGTTGCTGTTTCTGTTGGTGCCAACATTTCTGGTGGCCATGTCAACCCTGCTGTTACCTTTGGATTGGCTCTTGGTGGCCACATCACCATCCTCACCGGTATCTTCTACTGGATTGCACAGCTTCTTGGCTCCATAGTGGCATGTTTTCTTCTCACCTTTGTCACAGGAGGCTTGGAAACTCCCATTCACAGTGTGGCTGCTGGAGTTGGAGCTGTTGAGGGAGTTGTTACTGAGATCATTATCACATTTGGTTTGGTCTACACTGTGTATGCCACAGCAGCTGACCCCAAGAAGGGCTCATTGGGAACCATTGCACCCATTGCCATTGGTTTCATTGTTGGTGCCAACATTTTGGCAGCAGGACCATTCTCTGGTGGATCAATGAACCCAGCACGTTCTTTTGGCCCTGCAGTTGTTAGTGGTAACTTCCATGACAACTGGATTTACTGGGTTGGACCTCTAATTGGTGGTGGTTTGGCTGGCCTTATCTATGGCAATGTGTTCATACGCTCAGAGCATGCACCCCTTTCTAGTGAATTCTGA 747 0.4739 MAGIALGRFDDSFSLGSIKAYIAEFISTLLFVFAGVGSAIAYGKLTSDAALDPSGLVAVAVCHGFALFVAVSVGANISGGHVNPAVTFGLALGGHITILTGIFYWIAQLLGSIVACFLLTFVTGGLETPIHSVAAGVGAVEGVVTEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGNFHDNWIYWVGPLIGGGLAGLIYGNVFIRSEHAPLSSEF* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02130 248 Gene3D Glycerol uptake facilitator protein. 2 246 IPR023271 -
Rops4g02130 248 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Rops4g02130 248 PANTHER AQUAPORIN-8 4 241 IPR034294 -
Rops4g02130 248 SUPERFAMILY Aquaporin-like 13 242 IPR023271 -
Rops4g02130 248 FunFam Probable aquaporin TIP1-1 2 248 - -
Rops4g02130 248 Pfam Major intrinsic protein 15 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops4g02130 248 NCBIfam MIP family channel protein 23 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops4g02130 248 CDD MIP 19 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops4g02130 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops4g02130 248 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops4g02130 248 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops4g02130 248 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops4g02130 248 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops4g02130 248 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02130 Rops-Chr4 47800994 47802499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02130 1 246 Major Intrinsic Protein MIP AT3G16240 82.186 5.54e-144 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02130 K09873 - gmx:100803901 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02130 4 47800994 47802499 Rops4g02130 4 47800994 47802499 ECH