Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02124 ATGACAGAAACTACCTCCTCCGAAACAACCACCACCAGCAGCAACTCCTCCTCCTCCACATCTTCACCAAACAAAACAGAGTCCCAAAAACAGAGCATGACCAAAAGATCCAGAGACTGCAGCAAGCACCCTGTTTACCACGGTGTACGGAAACGCAACTGGGGCAAATGGGTCTCCGAAATTCGTGAGCCACGCAAGAAATCACGCATCTGGCTTGGTACTTTCGCAACCCCTGAAATGGCAGCTAGAGCACATGATGTTGCTGCTCTTACCGTTAAGGGACAATCAGCTATTCTTAACTTCCCCGACATAGCTGACATGCTTCCTAGACCTGCCACGTCATCACCACGTGACATCCAAGCCGCAGCTACAGCAGCAGCAGCTATGGTTAACTTAGACCCTGTGGTGCACTCAGAAGAGTCAGAATCTTCAGAATTGAGTGAGATAGTTCAGCTTCCGAATATTGAAGACTCGGTGGATTCTAGAACTGAGTTCATGTTGCTTGACTTGGTTGATAGTTGGGTGTATCCACCAATGGAGTTAGAGGGAATTGAGTTCTGTGCCACTTTTTCTGATGAGTTATTTCCACAACAGAGTTTTATTGAAGACAACTTTGATGAGTTTGAGATACCCATTTGGGATTGA 645 0.4667 MTETTSSETTTTSSNSSSSTSSPNKTESQKQSMTKRSRDCSKHPVYHGVRKRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALTVKGQSAILNFPDIADMLPRPATSSPRDIQAAATAAAAMVNLDPVVHSEESESSELSEIVQLPNIEDSVDSRTEFMLLDLVDSWVYPPMELEGIEFCATFSDELFPQQSFIEDNFDEFEIPIWD* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02124 214 MobiDBLite consensus disorder prediction 31 46 - -
Rops4g02124 214 FunFam Ethylene-responsive transcription factor 2 44 103 - -
Rops4g02124 214 SUPERFAMILY DNA-binding domain 45 103 IPR016177 GO:0003677
Rops4g02124 214 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Rops4g02124 214 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 20 159 - -
Rops4g02124 214 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Rops4g02124 214 Pfam AP2 domain 44 94 IPR001471 GO:0003700|GO:0006355
Rops4g02124 214 CDD AP2 46 103 IPR001471 GO:0003700|GO:0006355
Rops4g02124 214 MobiDBLite consensus disorder prediction 1 30 - -
Rops4g02124 214 MobiDBLite consensus disorder prediction 1 46 - -
Rops4g02124 214 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
Rops4g02124 214 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Rops4g02124 214 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02124 Rops-Chr4 47738588 47739682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02124 15 178 AP2-EREBP Transcription Factor Family AT5G11590 52.880 7.82e-60 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops4g02124 AP2 1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02124 K09286 - gmx:100804056 290.426