Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02120 ATGGAAGCGCCGGAATACTTCGTCGGTGGCTATTACGGCGCCGGAGGAGAGAACCAATTCTCGCCTGAAAAGCGCCATGGCGACCAGAAGAACGGCGAGCCTTTCGCCATTGATGACCTCCTTGACTTCTCCAATGCCGACGCCATTATGTCCGACGGTTTCTTCGACAATGTCGCCGGAAATTCCGCCGACTCCTCCACCGTCACCGCCGTCGATAGCTGCAACTCATCAATTTCGAACGGTGACAACCTTTACGCCGCCGCCATTGTCCCTCGCGGCTTCGCCGGCGATCCTCAACTCACCGGAGAACTCTGCGTTCCGTATGATGACATGGCGGAACTGGAATGGCTCTCGAACTTCGTGGAAGACTCATTCTCCGCCGAAGAAGAACTGAAAACGCTTCAACTTCTCTCCGGCGCCACCGCTTCCACTGGCATCGGAGCAAAACCTCAAACTCCGGAGTCTTCCTCTTCCACCGACACGCTTCCTTCGTTCGGCAACGACGACGGCACTCGAAACACACCGTTTCTCCACACGGAAACTCCGCTGCCTGGAAAGGCACGCAGCAAGCGTTCACGCGCCGCACCGGGTGACTGGTCCACGCGCCTCCTTCACCTTGCCGTTCCAGCCGACGTGACTGCGCAGCATCAGTCTGCGCCGGTGAAGAAGCGTGAAGGCTCGAACGCGGAGTACTCTGGAAGGAAATGCCTTCATTGCGGCGCGGAGAAAACGCCGCAATGGCGGACAGGACCGATGGGACCGAAGACGCTGTGCAATGCGTGCGGCGTGAGGTTCAAGTCCGGTAGGTTGGTGCCGGAGTATCGGCCGGCGGCGAGCCCGACGTTTGTGTCGACGAAGCATTCGAATTCACACAGAAAGGTTATAGAACTGAGGAGGCAGAAGGAGTTGCAACGACAGCAGCATCAGCAACTTCTGAGTCAAAGTACCATTTTCGGCGTATCCAACGGTGGAGATGATTTCATCATCCATCGTCATTGTGGGCCACAGTTTAGGCATGTTATCTAG 1026 0.5692 MEAPEYFVGGYYGAGGENQFSPEKRHGDQKNGEPFAIDDLLDFSNADAIMSDGFFDNVAGNSADSSTVTAVDSCNSSISNGDNLYAAAIVPRGFAGDPQLTGELCVPYDDMAELEWLSNFVEDSFSAEEELKTLQLLSGATASTGIGAKPQTPESSSSTDTLPSFGNDDGTRNTPFLHTETPLPGKARSKRSRAAPGDWSTRLLHLAVPADVTAQHQSAPVKKREGSNAEYSGRKCLHCGAEKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFVSTKHSNSHRKVIELRRQKELQRQQHQQLLSQSTIFGVSNGGDDFIIHRHCGPQFRHVI* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02120 341 Coils Coil 294 314 - -
Rops4g02120 341 CDD ZnF_GATA 235 282 IPR000679 GO:0006355|GO:0043565
Rops4g02120 341 ProSiteProfiles GATA-type zinc finger domain profile. 230 266 IPR000679 GO:0006355|GO:0043565
Rops4g02120 341 Pfam GATA zinc finger 236 269 IPR000679 GO:0006355|GO:0043565
Rops4g02120 341 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 232 293 - -
Rops4g02120 341 PANTHER GATA TRANSCRIPTION FACTOR 25 309 - -
Rops4g02120 341 PIRSF Txn_fac_GATA_plant 19 323 IPR016679 GO:0003677|GO:0005634|GO:0045893
Rops4g02120 341 ProSitePatterns GATA-type zinc finger domain. 236 261 IPR000679 GO:0006355|GO:0043565
Rops4g02120 341 SMART GATA_3 230 280 IPR000679 GO:0006355|GO:0043565
Rops4g02120 341 MobiDBLite consensus disorder prediction 144 198 - -
Rops4g02120 341 FunFam GATA transcription factor 225 311 - -
Rops4g02120 341 Gene3D - 230 280 IPR013088 GO:0006355|GO:0008270
Rops4g02120 341 MobiDBLite consensus disorder prediction 144 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02120 Rops-Chr4 47682949 47684276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02120 31 341 C2C2-Gata Transcription Factor Family AT4G32890 45.706 1.43e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Rops4g02120 GATA 4.5e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02120 - - gmx:100776605 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02120 4 47682949 47684276 Rops4g02120 4 47682949 47684276 ECH