Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02119 ATGTCCTGCAAGGATGGTAGCAAAAACGGAATGGATAACGGAAAGTATGTCCGTTACACACCTGAGCAGGTTGAAGCCCTTGAGAGGCTTTATCATGATTGCCCTAAACCAAGTTCCATTCGCCGCCAGCAACTCATTCGTGAGTGCCCCATTCTCTCCCACATTGAGCCAAAGCAAATCAAAGTTTGGTTCCAAAACAGAAGATGTAGAGAGAAGCAGAGGAAAGAAGCTTCGCGGCTGCAAGCTGTGAATAGGAAGTTGACCGCTATGAACAAGCTGCTGATGGAGGAAAATGATAGGTTGCAGAAGCAGGTGTCTCAACTGGTGTACGAAAATGGTTATTTTCGTCAAAACACTCAGAATACCGCACAGGCAACCAAAGACACAAGTTGTGAATCAGCGGTGATGAGTGGTCAGCACAGTTTGACAACTCAGCATCCCCCAAGGGATGCCAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAGACTTTAGCAGAATTTCTTTCGAAGGCTACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCAAGAGCTTGTGGTCTAGTGGGACTTGAACCCACTAGGGTTGCTGAAATCCTCAAAGATCGGCCTTTGTGGTTTCGCGATTGCCGAGCTGTTGATGTTCTCAATGTGCTGCCCACAGCAAATGGTGGAACAATCGAGCTGCTTTATATGCAGCTATATGCACCCACCACATTGGCACCTGCTCGAGACTTCTGGTTATTGCGCTACACTTCTGTTTTAGAAGATGGAAGCCTAGTGATCTGTGAGAGGTCTCTTAAAAATACTCAAAATGGTCCAAGCATGCCTCCTGTGCAGCATTTTGTTAGAGCAGAGATGCTTCCTAGTGGGTACCTGATAAGACCTTGTGAAGGAGGTGGTTCCCTCATCCACATTGTTGATCATATGGATTTGGAGCCATGGAGTGTGCCAGAAGTGCTGCGTCCACTGTATGAATCGTCAACAGTGCTGGCTCAGAAGACAACTATGGCGGCCCTACGTCAGCTAAGGCAGATTTCGCATGAGGTTTCTCAGTCTGATGTCACTGGGTGGGGTAGACGACCAGCAGCTCTACGAGCACTTACCCAGAGATTGAGCCGGGGTTTCAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACCATGATTGGCAATGATGGTGTAGATGATGTTACTATTCTGGTGAATTCATCCCCTGACAAGTTAATGGGTCTGAATCTCTCCTTTGCCAATGGATTTCCTTCTGTCAATAATGCAGTGTTATGTGCCAAAGCATCAATGCTACTACAGAATGTGCCTCCAGCCATTCTCCTAAGGTTCCTGAGGGAGCATAGATCAGAATGGGCAGACAACAACTTGGATGCTTACACAGCTGCTGCCATTAAAGTTGGCCCTTGTAGCTTTTCAGGATCTCGCATTGGAAATTTTGGGGGTCAAGTTATACTCCCTCTAGCACACACCATTGAGCATGAGGAGTTTTTGGAAGTCATTAAATTGGAAGGAGTTGCTCATTCTCCTGAAGACGCAATGATGCCCAGAGAAGTGTTTCTTTTGCAACTCTGCAGTGGAATGGATGAGAATGCTGTTGGCACCTGTGCTGAACTTATTTTTGCTCCAATTGATGCCTCCTTTGCTGATGATGCTCCACTTCTACCTTCTGGATTTCGCATCATTCCTCTTGAATCTGGAAAGGAAGCTTCCAGCCCTAATCGCACCCTTGACCTTGCATCTGCCCTTGACATTGGCCCCATGGGAAACCGAGCTTCAAATGATCATGCTGGAAATTCTGGCTGTATGAGATCTGTAATGACAATAGCATTTGAATTTGCATTTGAAAGTCATATGCAAGAGCATGTAGCATCTATGGCACGTCAGTATGTTCGAAGCATTATATCATCAGTCCAAAGGGTAGCATTAGCACTTTCTCCTTCTCATTTGAGTACACATGGTGGGCTTAGGTCACCATTAGGTACACCTGAAGCACAAACCCTTGCTCAGTGGATCTGCAACAGTTATAGGTGCTACTTGGGTGTGGAGCTGCTTAAATCTAATAATGAGGGGAACGAATCTTTACTCAAGTCCTTGTGGCATCACTCAGATGCTGTATTGTGCTGCACTCTAAAGGAATTGCCAGTGTTTACTTTCTCAAACCAGGCAGGGCTTGACATGCTGGAGACCACCTTAGTTGCATTACAAGATATAACTTTAGAGAAAATATTTGATGATCAGGGACGAAAAATTCTCTTTTCAGAGTTTCCCCAGATTATTCAACAGGGTTTTGCGTGTCTTCAAGGTGGTATTTGTCTCTCAAGTATGGGGCGACCTGTCTCATACGAGAGAGTTGTTGCTTGGAAGGTGCTGAATGAAGAAGAGAATGCTCATTGTATTTGCTTTATGTTTATGAACTGGTCTTTTGTTTGA 2511 0.458 MSCKDGSKNGMDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSHIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQNTQNTAQATKDTSCESAVMSGQHSLTTQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPLWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPSMPPVQHFVRAEMLPSGYLIRPCEGGGSLIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALRQLRQISHEVSQSDVTGWGRRPAALRALTQRLSRGFNEALNGFTDEGWTMIGNDGVDDVTILVNSSPDKLMGLNLSFANGFPSVNNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNLDAYTAAAIKVGPCSFSGSRIGNFGGQVILPLAHTIEHEEFLEVIKLEGVAHSPEDAMMPREVFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLPSGFRIIPLESGKEASSPNRTLDLASALDIGPMGNRASNDHAGNSGCMRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSTHGGLRSPLGTPEAQTLAQWICNSYRCYLGVELLKSNNEGNESLLKSLWHHSDAVLCCTLKELPVFTFSNQAGLDMLETTLVALQDITLEKIFDDQGRKILFSEFPQIIQQGFACLQGGICLSSMGRPVSYERVVAWKVLNEEENAHCICFMFMNWSFV* 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02119 836 Pfam MEKHLA domain 693 835 IPR013978 -
Rops4g02119 836 SUPERFAMILY Bet v1-like 158 367 - -
Rops4g02119 836 CDD homeodomain 15 75 IPR001356 GO:0003677
Rops4g02119 836 CDD bZIP 67 106 - -
Rops4g02119 836 Gene3D - 193 375 IPR023393 -
Rops4g02119 836 CDD START_ArGLABRA2_like 153 368 - -
Rops4g02119 836 SMART START_1 158 368 IPR002913 GO:0008289
Rops4g02119 836 Coils Coil 70 111 - -
Rops4g02119 836 MobiDBLite consensus disorder prediction 121 148 - -
Rops4g02119 836 Gene3D - 6 81 - -
Rops4g02119 836 FunFam homeobox-leucine zipper protein ATHB-15 194 375 - -
Rops4g02119 836 Pfam START domain 159 367 IPR002913 GO:0008289
Rops4g02119 836 MobiDBLite consensus disorder prediction 121 150 - -
Rops4g02119 836 ProSiteProfiles START domain profile. 149 364 IPR002913 GO:0008289
Rops4g02119 836 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 11 836 IPR044830 GO:0003700
Rops4g02119 836 FunFam Homeobox-leucine zipper protein REVOLUTA 15 70 - -
Rops4g02119 836 SUPERFAMILY Homeodomain-like 14 78 IPR009057 -
Rops4g02119 836 ProSiteProfiles 'Homeobox' domain profile. 10 74 IPR001356 GO:0003677
Rops4g02119 836 SMART HOX_1 12 78 IPR001356 GO:0003677
Rops4g02119 836 Pfam Homeodomain 15 73 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02119 Rops-Chr4 47653646 47662943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02119 1 788 Homeobox Transcription Factor Family AT1G52150 84.937 0.0 1403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops4g02119 START 2.6e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02119 K09338 - gmx:100800165 1609.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02119 4 47653646 47662943 Rops4g02119 4 47653646 47662943 ECH
Rops7g00262 7 3417580 3425036 Rops4g02119 4 47653646 47662943 PCT