Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02115 ATGCCGGTGCTGCGTAGCGGAGTGCGCAGGGGCCGGGCAGCAGCGAAGCAACAACAGAATCAGCAAGAGCAGAGTCCGGTGGAAGGGGAAGCGATTGCAACGAGGACGAGGAGGCGGCGTGCGGCGGCAGCGGTGGTGGTGCCGAAGAATAATAAGCAACAAAAGCAAGAGGAGGCGGCGGTAAATGAGAACGTAGCTTTTGTGCCGGAGAAGGAAGAGGAAAATCGAGGGTTGGAGGAAGGTGGTGGAGCGGAGAAAGAAGGGGTAGGGGAGAAACAGATGGATGAACTTGATAGTGGAGCTCGTAGCAATGATAAAGCCAATGCTGGTGAAGATGATGGAAGTGCCTTTGTGCTTCCTGAAAAGGTTCAAGTAGGTAATTCTCCTTGGTATAAAATAGAAAGAAAACTTGGCAAAGGTGGATTTGGTCAAGTATATGTTGGTCGACGTGTTTCTGGTGTAAATTTGAGTGAGAGAACTGGACCTGGAGCAGTAGAGGTTGCAATAAAATTTGAGCACAAGTCTAGTAAAGGATGTAACTATGGACCACCCTACGAATGGCAAGTGTACAATACTCTTGGTGGCAGTCATGGTGTGCCACAAGTTCATTACAAGGGCAGGCAAGGTGACTATTTTATCATGGTTATGGATATGCTGGGACCTAGCTTGTGGGATGTTTGGAATAATAACTCTCACACTATGTCCACTGAAATGGTTGCTTGTATTGCCATTGAAGCAGTTTCCATATTGGAGAAGATGCATTCTCGAGGGTATGTGCATGGGGATGTGAAGCCTGAGAATTTTCTGCTTGGTCCTCCTGGGACACCTGATGAGAAAAAATTGTTCCTTGTAGATCTTGGATTAGCTACTAAATGGCGGGATAGTACAACAGGCTTGCATGTGGAATATGATCAAAGGCCGGATGTTTTCAGGGGAACAGTCCGCTATGCTAGTGTGCATGCACATTTGGGGAGAACTGGTAGCAGGAGGGATGATTTGGAATCTCTTGCATATACACTGATTTTTCTTCTTCGAGGTCGTCTTCCTTGGCAGGGATACCAGGGAGAAAACAAAGGATTTCTGGTTTGCAAGAAGAAGATGGGAACATCCCCAGATAGCCTGTGTTGCTTTTGTCCCCAACCTTTTAGACAGTTTGTTGAACATGTGGTTAACTTGAAGTTTGATGAAGAGCCTAACTATGCAAAATACATTTCTCTATTTGATGGGATTGTTGGTCCAAACCCAGATATTAGGCCAATTAATACTGAAGGTGCCCAAAAGCTCATTGGTCATAAGAGAGGCCGGTTGGCGATGGAAGAAGACGATGATGAACAACCTAAAAAGAAGGTTCGTATGGGTTTGCCAGCAACCCAGTGGATAAGTGTTTATAATGCTCGTAGACCGATGAAACAAAGATATCACTACAATGTTGCAGATTCAAGGCTATCCCAGCATATTGAGAAAGGAAATGAGGATGGCTTATTTATTAGCAGTGTTGCTTCATGTCAGAACCTATGGGCCTTAATCATGGATGCTGGGACGGGTTTCACTGCCCAAGTTTATGAACTCTCCCCCAGCTTTCTCCATAAGGAATGGATCATGGAGCAGTGGGAAAAAAATTACTACATCAGCGCCATTGCTGGAGCTGTAAATGGAAGCTCACTAGTAGTAATGTCCAAGGGCACACAGTATTTGCAGCAATCATACAAAGTTAGTGATTCATTTCCTTTCAAGTGGATTAACAAAAAATGGAGGGAGGGCTTTTACGTGACTGCAATGGCCACCTCAGCAGCCAGGTGGGCTGTAGTTATGTCTCGTGGCGCAGGATTTTCAGATCAGGTGGTTGAACTGGATTTTCTGTATCCAAGTGAAGGGGTTCACAAGCGGTGGGATTGTGGATACCGAATCACAGCCACTGCTGCAACTTGGGACCAAGCTGCTTTTGTCCTTAGTGTACCAAGGAGGAAGCCTATGGATGAAACTCAGGAAACACTTAGGACTACTGCTTTTCCTAGTACACATGTCAAGGAGAAGTGGGCAAAGAACCTCTACATTGCTTCTGTTTGCTACGGACGCACAGTTTCTTGA 2088 0.4583 MPVLRSGVRRGRAAAKQQQNQQEQSPVEGEAIATRTRRRRAAAAVVVPKNNKQQKQEEAAVNENVAFVPEKEEENRGLEEGGGAEKEGVGEKQMDELDSGARSNDKANAGEDDGSAFVLPEKVQVGNSPWYKIERKLGKGGFGQVYVGRRVSGVNLSERTGPGAVEVAIKFEHKSSKGCNYGPPYEWQVYNTLGGSHGVPQVHYKGRQGDYFIMVMDMLGPSLWDVWNNNSHTMSTEMVACIAIEAVSILEKMHSRGYVHGDVKPENFLLGPPGTPDEKKLFLVDLGLATKWRDSTTGLHVEYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFLVCKKKMGTSPDSLCCFCPQPFRQFVEHVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTEGAQKLIGHKRGRLAMEEDDDEQPKKKVRMGLPATQWISVYNARRPMKQRYHYNVADSRLSQHIEKGNEDGLFISSVASCQNLWALIMDAGTGFTAQVYELSPSFLHKEWIMEQWEKNYYISAIAGAVNGSSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWREGFYVTAMATSAARWAVVMSRGAGFSDQVVELDFLYPSEGVHKRWDCGYRITATAATWDQAAFVLSVPRRKPMDETQETLRTTAFPSTHVKEKWAKNLYIASVCYGRTVS* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02115 695 FunFam casein kinase 1-like protein HD16 104 451 - -
Rops4g02115 695 MobiDBLite consensus disorder prediction 67 109 - -
Rops4g02115 695 MobiDBLite consensus disorder prediction 13 29 - -
Rops4g02115 695 Pfam Protein kinase domain 131 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g02115 695 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Rops4g02115 695 Gene3D Transferase(Phosphotransferase) domain 1 97 451 - -
Rops4g02115 695 MobiDBLite consensus disorder prediction 1 115 - -
Rops4g02115 695 ProSitePatterns Protein kinases ATP-binding region signature. 137 170 IPR017441 GO:0005524
Rops4g02115 695 PANTHER CASEIN KINASE-RELATED 125 658 - -
Rops4g02115 695 SMART serkin_6 131 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g02115 695 ProSiteProfiles Protein kinase domain profile. 131 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g02115 695 SUPERFAMILY Protein kinase-like (PK-like) 131 411 IPR011009 -
Rops4g02115 695 CDD STKc_CK1 131 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02115 Rops-Chr4 47616108 47621874 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02115 226 407 MAP Kinase Kinase Kinase AT5G50180 25.263 1.77e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Rops4g02115 Pkinase 1.1e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02115 - - gmx:100800869 1196.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02115 4 47616108 47621874 Rops4g02115 4 47616108 47621874 ECH