Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02108 ATGATCTCCTCCATTAGATGCACCTCCCTGTGCAACTCTAGCATAGGTGGGTGGTCTTCTTGTAGCAACAACTTCTCTGGTACACGGAGAAAACGTTCAGGTTCTTTGAGGGTGGCGTGTTCAGCTTCAAGCAGCAAGAAGTCAGGTGACAAAAACGGCAACGTTTTGATGGAGACACCGTTGAAAGAGACAAACGACGAGCACCCAACTGTCACCGGCGGCGTCCAGGATGTGTATGGTGAGGATAGGGCCTCCGAGGATCAGTTTGTTACTCCATGGAGTGTCTCTGTTGCTAGTGGGTATACTTTGTTGAGAGATCCACACTTCAATAAAGGGTTAGCATTCACTGAGAAAGAGAGGGATGCTCACTACTTGCGTGGTCTTCTTCCCCCAACAGTTATTCCTCAAGAAACTCAGGTGAAGAAAATGATTCAACACGTACGCCAGTATCAAGTTCCATTGCAAAAGTACATGGCAATGATGGATCTTCAGGAGACAAACGAAAGGCTGTTTTACAAGCTTCTAATTGATCATGTCGAGGAGTTACTCCCTGTTGTCTATACTCCAACTGTTGGTGAAGCTTGCCAGAAATATGGGAGCATCTTCATGCGTCCTCAGGGTCTTTATATAAGTTTGAAAGAGAAAGGGAGGATTCTTGAAGTACTTAGGAATTGGCCTGAGAAGAACATCCAAGTCATTGTTGTAACTGATGGAGAGCGGATCCTGGGTCTTGGGGATCTGGGCTGTCAAGGGATGGGAATACCAGTGGGAAAACTTTCTTTATACACGGCACTTGGTGGAGTTCGCCCTTCTTCTTGCTTGCCTATTACCATTGATGTGGGTACAAACAATGAGAGGCTGTTGAATGATGAATTATATATAGGGCTCAAACATCGACGAGTAACTGGACAGGAATATGCTGAACTTCTCCATGAATTTATGACTGCAGTCAAGCAAAATTATGGAGAAAAAATTCTCATCCAGTTTGAAGACTTTGCAAACCACAATGCTTTTGATCTACTTGAAAAATATAGGTCAACACATCTTGTTTTTAATGATGATATTCAGGGGACTGCATCAGTGGTCCTTGCAGGGCTTGTTGCAGCTCTGAATTTGGTTGGTGGAAGCTTGGCTGACCATAGGTTCTTATTCCTTGGTGCTGGAGAGGCTGGCACTGGAATAGCAGAACTCATAGCACTTGAAATATCAAAACGGACAAATGCCCCAGTGGAAGAAGTGCGCAAGAATATTTGGTTGGTGGACTCAAAGGGTTTGATTGTCAGTTCCCGCAAAGAATCACTCCAACATTTTAAGAAGCCCTGGGCTCATGAACATGAACCTGTTAAGGAACTTGTAGATGCTATTAATCAAATTAAGCCAACAGTGTTGATCGGAACATCAGGACAAGGCAGAACTTTTACTCAACAAGTGGTTGAGGCTATGGCCACCATTAATGAGAAACCTATTATCCTTGCTCTTTCCAACCCGACATCACAGTCAGAATGTACTGCTGAAGAAGCTTACACATGGAGCCAGGGACGTGCCATATTTGCTAGTGGGAGTCCGTTTGCTCCAGTTGAATTAGATGGAAAAGTGTTTGTGCCTGGCCAGGCCAATAATGCATACATTTTCCCTGGATTTGGTCTTGGGTTAATAATGTCTGGGACCATCCGAGTGCATGATGACCTGCTTCTAGCAGCTTCTGAGGCTTTGGCTTCACAAGTGACCCAGGAGGACTTTGACAAGGGACTCATATACCCACCATTCACTAATATCAGAAAGATTTCAGCACACATAGCTGCCAGTGTGGCTGCTAAGGCCTATGAACTTGGATTGGCCACTCGCCTTCCTCAACCAAAAAATTTGGTGAAGTTTGCTGAGAGCTGTATGTATACCCCAACTTATAGAAGCTATCGGTGA 1920 0.4469 MISSIRCTSLCNSSIGGWSSCSNNFSGTRRKRSGSLRVACSASSSKKSGDKNGNVLMETPLKETNDEHPTVTGGVQDVYGEDRASEDQFVTPWSVSVASGYTLLRDPHFNKGLAFTEKERDAHYLRGLLPPTVIPQETQVKKMIQHVRQYQVPLQKYMAMMDLQETNERLFYKLLIDHVEELLPVVYTPTVGEACQKYGSIFMRPQGLYISLKEKGRILEVLRNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSSCLPITIDVGTNNERLLNDELYIGLKHRRVTGQEYAELLHEFMTAVKQNYGEKILIQFEDFANHNAFDLLEKYRSTHLVFNDDIQGTASVVLAGLVAALNLVGGSLADHRFLFLGAGEAGTGIAELIALEISKRTNAPVEEVRKNIWLVDSKGLIVSSRKESLQHFKKPWAHEHEPVKELVDAINQIKPTVLIGTSGQGRTFTQQVVEAMATINEKPIILALSNPTSQSECTAEEAYTWSQGRAIFASGSPFAPVELDGKVFVPGQANNAYIFPGFGLGLIMSGTIRVHDDLLLAASEALASQVTQEDFDKGLIYPPFTNIRKISAHIAASVAAKAYELGLATRLPQPKNLVKFAESCMYTPTYRSYR* 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02108 639 SMART malic_2 164 345 IPR012301 GO:0004471
Rops4g02108 639 FunFam Malic enzyme 98 352 - -
Rops4g02108 639 PIRSF ME 60 639 IPR001891 GO:0004470|GO:0004471
Rops4g02108 639 Gene3D - 353 639 - -
Rops4g02108 639 Gene3D - 98 352 IPR037062 GO:0004471
Rops4g02108 639 Pfam Malic enzyme, N-terminal domain 164 345 IPR012301 GO:0004471
Rops4g02108 639 ProSitePatterns Malic enzymes signature. 351 367 IPR015884 GO:0004471
Rops4g02108 639 CDD NAD_bind_1_malic_enz 355 633 - -
Rops4g02108 639 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Rops4g02108 639 FunFam Malic enzyme 353 639 - -
Rops4g02108 639 PRINTS Malic enzyme signature 230 259 IPR001891 GO:0004470|GO:0004471
Rops4g02108 639 PRINTS Malic enzyme signature 382 398 IPR001891 GO:0004470|GO:0004471
Rops4g02108 639 PRINTS Malic enzyme signature 266 288 IPR001891 GO:0004470|GO:0004471
Rops4g02108 639 PRINTS Malic enzyme signature 351 367 IPR001891 GO:0004470|GO:0004471
Rops4g02108 639 PRINTS Malic enzyme signature 326 344 IPR001891 GO:0004470|GO:0004471
Rops4g02108 639 PRINTS Malic enzyme signature 170 194 IPR001891 GO:0004470|GO:0004471
Rops4g02108 639 PRINTS Malic enzyme signature 485 501 IPR001891 GO:0004470|GO:0004471
Rops4g02108 639 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 76 354 IPR046346 -
Rops4g02108 639 Pfam Malic enzyme, NAD binding domain 355 607 IPR012302 GO:0051287
Rops4g02108 639 MobiDBLite consensus disorder prediction 36 52 - -
Rops4g02108 639 SMART Malic_M_2 355 608 IPR012302 GO:0051287
Rops4g02108 639 PANTHER MALIC ENZYME-RELATED 68 638 - -
Rops4g02108 639 MobiDBLite consensus disorder prediction 36 72 - -
Rops4g02108 639 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 355 638 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02108 Rops-Chr4 47511521 47516886 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02108 K00029 - gmx:100791514 1078.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02108 4 47511521 47516886 Rops4g02108 4 47511521 47516886 ECH
Rops4g02108 4 47511521 47516886 Rops7g00272 7 3508918 3514630 ECH
Rops2g00326 2 4901488 4906262 Rops4g02108 4 47511521 47516886 ECH
Rops10g01603 10 29586920 29592143 Rops4g02108 4 47511521 47516886 ECH
Rops4g02108 4 47511521 47516886 Rops10g01603 10 29586920 29592143 ECH
Rops4g02108 4 47511521 47516886 Rops5g01056 5 21546642 21548379 ECH
Rops4g02108 4 47511521 47516886 Rops6g02676 6 48144927 48146228 ECH
Rops4g02108 4 47511521 47516886 Rops4g01545 4 38553180 38554666 ECH
Rops4g02108 4 47511521 47516886 Rops8g01021 8 21503416 21505023 ECH
Rops7g00272 7 3508918 3514630 Rops4g02108 4 47511521 47516886 PCT