Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02099 ATGTGGCAAAGAAGCCACAAGTCTTCAGAGGAGAGGAAACTAGAGCTTAGACTTGGTCCACCTGGTGAAGAGTCTCTCAATGAAGACATGAAAAATGTCAAAAGAGAAAGAGATGAATCTCCATTAACTCTTGGTTCAGGTGGTGGGGCTATTTTTCCCTCTGCATGGGCTTCCACATGCTATCACCAGCATAATCCACACGAGGCTATAGCCAAAGCTTCATCATTCCTTCAGCTCCCATCAAGCTCACAGAACATGCTAGTGATTAGAAAGGATGTGTCACAACCCAGTTGTGTAGACTTGCATAATGTAGAAAAGAATGCATTTTCACCCTCTTCTTCAAATACAGCTGTGCCTAACAGGTCTCAGAAAAGAACTGCTCCTAGTCCAGTAGTTGGTTGGCCTCCAATTCGTTCATTCAGGAAGAACATTGCAAGTGGAAACTCTTCTAAGCCACCTCGGGGGTCCCAGCAACCTCAACATGTGGTTCCTGACAATGTTACTACTAATAAACCTATTGACAATTCTGGTAAAGGCTTGTTTGTGAAGGTCAATATGGATGGAGTTCCCATTGGGAGAAAAGTGGACATCAATGCTTACAACAGTTATGAAAAACTTTCCTCTGCTATTGATGAGCTCTTTAGAGACCTCCTTGCTGAGCTAAATTTATCTCCCATTGTCTTTTCCCACTGTCAAAAAGATTCCTCTACTGGTGGAAATCACAACAAGCAAGAGGAAGAGAAAGCCATTACAGGATTGGTCAAAAGTGGGAAATATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCGCATGTTTGTATCAACAGTGAAGAGGCTGCGAGTGTTGAAGAGTTCTGATCTTCCTACTTTTACCCTTGGTAGTAGGCAAGACTAG 921 0.4311 MWQRSHKSSEERKLELRLGPPGEESLNEDMKNVKRERDESPLTLGSGGGAIFPSAWASTCYHQHNPHEAIAKASSFLQLPSSSQNMLVIRKDVSQPSCVDLHNVEKNAFSPSSSNTAVPNRSQKRTAPSPVVGWPPIRSFRKNIASGNSSKPPRGSQQPQHVVPDNVTTNKPIDNSGKGLFVKVNMDGVPIGRKVDINAYNSYEKLSSAIDELFRDLLAELNLSPIVFSHCQKDSSTGGNHNKQEEEKAITGLVKSGKYTLVYEDNEGDRMLVGDVPWRMFVSTVKRLRVLKSSDLPTFTLGSRQD* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02099 306 Gene3D - 174 304 - -
Rops4g02099 306 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 295 IPR003311 GO:0005634|GO:0006355
Rops4g02099 306 MobiDBLite consensus disorder prediction 107 176 - -
Rops4g02099 306 FunFam Auxin-responsive protein 174 304 - -
Rops4g02099 306 MobiDBLite consensus disorder prediction 107 127 - -
Rops4g02099 306 MobiDBLite consensus disorder prediction 1 48 - -
Rops4g02099 306 SUPERFAMILY CAD & PB1 domains 175 290 - -
Rops4g02099 306 ProSiteProfiles PB1 domain profile. 179 293 IPR000270 GO:0005515
Rops4g02099 306 MobiDBLite consensus disorder prediction 142 175 - -
Rops4g02099 306 Pfam AUX/IAA family 14 296 IPR033389 -
Rops4g02099 306 MobiDBLite consensus disorder prediction 1 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02099 Rops-Chr4 47423870 47426830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02099 113 304 B3 DNA Binding Superfamily AT4G23980 27.979 5.59e-12 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Rops4g02099 AUX_IAA 6e-66 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02099 K14484 - gmx:100793822 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02099 4 47423870 47426830 Rops7g00280 7 3615246 3619101 ECH
Rops4g02099 4 47423870 47426830 Rops4g02099 4 47423870 47426830 ECH
Rops7g00280 7 3615246 3619101 Rops4g02099 4 47423870 47426830 PCT