Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02096 ATGGGCAAAGCTAGCAGGTGGTTGAAGGGCTTGTTGGGTATGAAGAAGGAGAAGGACCTCAGTGATAATTCAGGGTCATTGGTTCCTGAAAAGAAGGAGAAGAGAAGGTGGAGTTTTGCAAAACAAGGGAAGGATGTGGCACCTAACATTAGTCCCAATGCTGTTCCAGCCACTGATAATGCTTGGCTCAGATCCTATATTGCTGAAACAGAGAACCAGCAGAACAAACATGCAATTGCTGTGGCAGCTGCCACCGCCGCCGCCGCAGACGCCGCCGTGGCGGCTGCACAGGCTGCTGTGGCCGTGGTGAGGCTAACAAGCCAGGGTAGAGGCACATTGTTCAGTGGGAGCAGAGAGAAGTGGGCTGCTGTGAAGGTCCAAACTTTCTTCAGAGGCTATTTGGCACGGAAGGCTCTTAGAGCACTGAAAGGATTGGTTAAGATACAAGCTCTTGTTAGAGGCTATCTAGTTAGAAAGAGGGCTGCTGCAACTCTTCACAGTATGCAAGCTCTAATAAGAGCTCAGGCTGCTGTTAGAACACAGAGAGCTCGTCGTTCAATGAGCAAAGAAAATAGATATCTACCTGAAGTTCTTGCAAGAAAATCTGTGGAACGATTTGATGAAACAAGGAGTGAATTCCACAGTAAAAGGCTACCTACATCTTATGAAACTTCCTTGAATGGATTTGATGAAAGCCCCAAAATTGTTGAGATTGACACTTATAAGACAAGACCAAGATCTAGGCGCTTTACATCTACAATGTCTGAATGTGGAGAAGACTTGCCTTGTCATGCAATCTCATCCCCTCTTCCTTGTCCTACCCCAGGTCGAACCTCAGCTCCTGATTGCAATTTTGATTGGTACTTCAATGTTGATGAGTGTAGGTTCTCAACAACAGCACATAGCACCCCACGTTTCACAAATTTTGTGCCTCCTAATGCTCTAGCTACACCATCCAAGAGTGTTTGTGGAGAAACTTTCTTTCGTCCTTACTCCAATTCCCCAAACTACATGGCCAATACTCAGTCATTTAAGGCAAAACTAAGGTCCTACAGTGCTCCAAGGCAAAGACCTGAACCCAAGAAAAGGCTCTCACTCAATGAAATGATGGCAGCAAGAAATAGCATAAGTGGCGTTAGAATGCAAAAGCCATCCAATTTCCACACTCAAGAATCATGGAATTTTTGA 1188 0.4554 MGKASRWLKGLLGMKKEKDLSDNSGSLVPEKKEKRRWSFAKQGKDVAPNISPNAVPATDNAWLRSYIAETENQQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGTLFSGSREKWAAVKVQTFFRGYLARKALRALKGLVKIQALVRGYLVRKRAAATLHSMQALIRAQAAVRTQRARRSMSKENRYLPEVLARKSVERFDETRSEFHSKRLPTSYETSLNGFDESPKIVEIDTYKTRPRSRRFTSTMSECGEDLPCHAISSPLPCPTPGRTSAPDCNFDWYFNVDECRFSTTAHSTPRFTNFVPPNALATPSKSVCGETFFRPYSNSPNYMANTQSFKAKLRSYSAPRQRPEPKKRLSLNEMMAARNSISGVRMQKPSNFHTQESWNF* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02096 395 PANTHER IQ-DOMAIN 5-RELATED 1 367 - -
Rops4g02096 395 Pfam Protein of unknown function (DUF4005) 317 377 IPR025064 -
Rops4g02096 395 ProSiteProfiles IQ motif profile. 167 196 IPR000048 GO:0005515
Rops4g02096 395 SMART iq_5 141 162 IPR000048 GO:0005515
Rops4g02096 395 SMART iq_5 118 140 IPR000048 GO:0005515
Rops4g02096 395 ProSiteProfiles IQ motif profile. 143 170 IPR000048 GO:0005515
Rops4g02096 395 Pfam IQ calmodulin-binding motif 121 140 IPR000048 GO:0005515
Rops4g02096 395 Pfam IQ calmodulin-binding motif 146 160 IPR000048 GO:0005515
Rops4g02096 395 ProSiteProfiles IQ motif profile. 119 147 IPR000048 GO:0005515
Rops4g02096 395 Gene3D - 60 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02096 Rops-Chr4 47383942 47385783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02096 1 381 IQD Protein Family AT3G16490 54.271 1.63e-107 320
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02096 4 47383942 47385783 Rops4g02096 4 47383942 47385783 ECH
Rops7g00282 7 3649897 3651548 Rops4g02096 4 47383942 47385783 PCT