Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02084 ATGCTTCCATGCATGACAGATAACATGGATAGAGAGCCACCATGGATCGTCACCTTCATGTTAAATGTATGCATATGGCTTGCCTTGATTCCACTTTTCATTTCTCATGCCAATTCAGCAGAACTAGACAAACCTCTTGCAAGAGAAATTGCTAACGATAAAAATCCTGGTTTCATAAGCATTGATTGTGGATCAAGCATGGCTTACTTGGACAATGATACTGGAATTTGGTATCAAACAGACGAAGGTTTTGCAGAAACAGGAATGAATCGTATGGTTTTATCCACTTACAACTTAAACTATCGCGACTTTGGGAAACAGTTGAACACATTGAGATACTTTCCAGAAGGAGACAGAAACTGCTACATGTTGAGACCAGAGCAGGGCAAAAATAATAAGTATCTCATAAGGGCTTTCTTTGCATATGGAAATTATGACGGCAAAAATCAAACCCAATCTTTTGACCTGTATCTTGGAGTCAATCTTTGGGAAAAACTTAATTTTAGTGTCCACACTGATTACGAATTCCGGGAGATAATTCACACTCCCTCAAGTGACAGGATTGATGTGTGCCTTGTGAAGACTGGTCCAACAATCCCTTTCATTTCTTCATTGGAATTACGGCCTTTGAACAGCTCCATTTATCAGAATCAGATCATGTCCAGCGATGATACACAACCATTGTTATATCTTGAACTTAGGGTTGATGTTGGCTCCCGTCAATTGCCGTCGCCTTATAATAACCTGTACAAAGATGATGTGTATGATCGCATATGGCGGTGTGACCCAATTTACTACGAGGGTAGTTGGTATCGGTTGGAAAAATCAATTAATACTGATACAGGAACCAATGACAATGCTTATAAATTGCCAGCCCAAGTACTGAGTAGTGCAGCCCAATCATGGAATGTTTCATACTCCTTGGCATTTAACTTTGACAAGGAGTTTGGTTATCTTGACAGGCCTTATGAGTATCATGTTTACTTCCACTTTGCTGAAATTCAGAAACTTCCGGATGGAGAAAAAAGAAAAATCAATATCACCCTCAATTCGAAGAACATTCTCACACAGCCTGTGGTTCTTGAATACTTGAAGCCCGTTAGTCTTGAATCCAAAACTCAAGGTTTTGTTCAGTTTATCATCAGTGCAATGTCACAATCGGATGCTCCCCCTATACTCAACGCCTTTGAGATCTATAAGTTGATAACCGAACTTGATTCCCCAACAGACGCTCAAGATGTTGGTGCAATTCTGGATATCAAAAGTGCCTACCAGATATCAAGATTGAGTTGGCAAGGAGACCCATGTCTTCCAAAGCAATATAAATGGGAGGGTCTCATTTGCACCTCTGACACCAATCCAAGGATCACATCTTTGAACCTTAGCTCAAGCAAACTCACGGGGGAGATAAATACTTCATTCTCACTTCTTAAAGAATTAGAATTCCTGGATTTGTCAAACAACAAGTTGGAAGGAGCTCTGCCAGAATTCCTGGCAGAATTGCCAAAGTTAAAAGTTCTTAATCTGTCAGGGAACAAGCTTTCGGGTCCAATTCCTAAGGCTCTCAAGGAAAAGGCAAACACAACTTTGGAATTAAGTGTGGCTGATAATCCTGATCTTTGTATGGCGGATTCATGCAAAAAGAAGAACATTGTTGTACCACTTGTTGCATCACTTTCAGCTTTAATTGTAATCCTCTTGGGTTCTCTTGGATTTTGGATACTCAGAAGACAAAAAGTTGTGCATTCTAATTTAAAGAAGGGGGGTTCATTGAAATCAAAACATCGAGCTTTCAGTAACACAGAGATCGTCAATATTACTGATAACTTCAAAACTATTATTGGAGAAGGAGGATTTGGAAAAGTTTACTTTGGCATTTTACAAGATGACACCCAAGTTGCTGTTAAGTTGCTTTCACCATCATCAATGCAAGGTTACAAGGAATTCCAATCAGAGGCACAACTTCTAATGACTGTTCATCATAGAAATTTGGTCTCTCTCATTGGGTACTGTGATGAAGGTGAAATCAAAGCGTTGATTTATGAATACATGGCCAATGGAAATCTCCTACAACACTTGTCAGTGAAAAATCCAAATGTTTTAAAGTGGAATGAGAGACTTAATATCGCAGTTGATGCAGCACAAGGACTAGATTATCTGCATAATGGTTGTAAACCACCTCTTGTCCACATAGATTTGAAGACTTCCAACATTTTACTAGATGAACACAAGCATGCCAAGATAGCTGATTTTGGTCTATGTAGAGCTTTCGGTAATGATAATGAGTCTCATATATCGACCCGCCCTGCTGGTACACCAGGTTACGTTGATCCAGAATTTCAAAGAACTGGAAACTCAAATAAGAAAAGTGATATTTACAGCTTTGGGATAATTCTATTTGAGTTAATCACTGGCCGACCAGCACTAGCAAGAGCACCTGAAAAAATCATTCACATTCTTCAATGGGTTATTCCCATAATTGAAAGAGGAGATATTCAGAACATTGTTGATCCAAGGTTGCAGGAAGAGATCAGTATCAATTCTGCATGGAAGATTGCAGAGATTGCCATGTCATGCACTTCACCTACTGCAGTTGAAAGACCAGACATGAGCCAAATATTGGTAGAGCTAAAGGAATGTCTTTCTTCAGAAATGGTTTAG 2661 0.3931 MLPCMTDNMDREPPWIVTFMLNVCIWLALIPLFISHANSAELDKPLAREIANDKNPGFISIDCGSSMAYLDNDTGIWYQTDEGFAETGMNRMVLSTYNLNYRDFGKQLNTLRYFPEGDRNCYMLRPEQGKNNKYLIRAFFAYGNYDGKNQTQSFDLYLGVNLWEKLNFSVHTDYEFREIIHTPSSDRIDVCLVKTGPTIPFISSLELRPLNSSIYQNQIMSSDDTQPLLYLELRVDVGSRQLPSPYNNLYKDDVYDRIWRCDPIYYEGSWYRLEKSINTDTGTNDNAYKLPAQVLSSAAQSWNVSYSLAFNFDKEFGYLDRPYEYHVYFHFAEIQKLPDGEKRKINITLNSKNILTQPVVLEYLKPVSLESKTQGFVQFIISAMSQSDAPPILNAFEIYKLITELDSPTDAQDVGAILDIKSAYQISRLSWQGDPCLPKQYKWEGLICTSDTNPRITSLNLSSSKLTGEINTSFSLLKELEFLDLSNNKLEGALPEFLAELPKLKVLNLSGNKLSGPIPKALKEKANTTLELSVADNPDLCMADSCKKKNIVVPLVASLSALIVILLGSLGFWILRRQKVVHSNLKKGGSLKSKHRAFSNTEIVNITDNFKTIIGEGGFGKVYFGILQDDTQVAVKLLSPSSMQGYKEFQSEAQLLMTVHHRNLVSLIGYCDEGEIKALIYEYMANGNLLQHLSVKNPNVLKWNERLNIAVDAAQGLDYLHNGCKPPLVHIDLKTSNILLDEHKHAKIADFGLCRAFGNDNESHISTRPAGTPGYVDPEFQRTGNSNKKSDIYSFGIILFELITGRPALARAPEKIIHILQWVIPIIERGDIQNIVDPRLQEEISINSAWKIAEIAMSCTSPTAVERPDMSQILVELKECLSSEMV* 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02084 886 PANTHER OS07G0107800 PROTEIN-RELATED 59 882 - -
Rops4g02084 886 Pfam Leucine rich repeat 454 514 IPR001611 GO:0005515
Rops4g02084 886 Pfam Protein tyrosine and serine/threonine kinase 610 876 IPR001245 GO:0004672|GO:0006468
Rops4g02084 886 FunFam Leucine-rich repeat receptor-like kinase 412 543 - -
Rops4g02084 886 Gene3D Phosphorylase Kinase; domain 1 589 683 - -
Rops4g02084 886 CDD STKc_IRAK 614 879 - -
Rops4g02084 886 SMART serkin_6 608 881 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g02084 886 SUPERFAMILY Protein kinase-like (PK-like) 593 877 IPR011009 -
Rops4g02084 886 ProSitePatterns Protein kinases ATP-binding region signature. 614 636 IPR017441 GO:0005524
Rops4g02084 886 Gene3D - 231 401 - -
Rops4g02084 886 SUPERFAMILY L domain-like 439 526 - -
Rops4g02084 886 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 684 886 - -
Rops4g02084 886 ProSitePatterns Serine/Threonine protein kinases active-site signature. 728 740 IPR008271 GO:0004672|GO:0006468
Rops4g02084 886 Gene3D Transferase(Phosphotransferase) domain 1 684 885 - -
Rops4g02084 886 FunFam Leucine-rich repeat receptor-like protein kinase 586 683 - -
Rops4g02084 886 ProSiteProfiles Protein kinase domain profile. 608 881 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g02084 886 Pfam Malectin-like domain 61 400 IPR024788 -
Rops4g02084 886 Gene3D Ribonuclease Inhibitor 414 538 IPR032675 -
Rops4g02084 886 PRINTS Leucine-rich repeat signature 501 514 - -
Rops4g02084 886 PRINTS Leucine-rich repeat signature 480 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02084 Rops-Chr4 47194613 47203652 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02084 51 881 Receptor kinase-like Gene Family AT2G19230 44.222 0.0 661
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Rops4g02084 Malectin_like 1.9e-84 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02084 - - mtr:25500358 1186.4