Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02077 ATGGCGACGGCGGGTCCGGGCGCAATGATGGAGGGAGTCGCGGCGGCGCAACCACCGGGGACAGACATGACCGGAATTTGCTTCAGAGACCAGTTGTGGCTGAACACTTACCCTCTCGATCGAAACCTCGTATTCGATTACTTCGCATTGTCCCCTTTCTACGATTGGACCTGTAACAACGAGCAACTCCGAATGCGCTCTCTCCACCCCCTCGACCCTTCTCAACTCTCGAAAATGACAGGTACAGAGTATGTGCTGAGTGAAGTGATGGAGCCTCACCTTTTTCTGATTCGTAAGCAAAAGAGAGATAGCCCTGACAAAGTTACTCCCATGCTCGCGTATTACATCTTGGATGGTTCAATCTACCAGGCTCCTCAGTTATGCAATGTTTTTGCTGCTAGAATTGGAAGGGCACTCTATCATATCCAGAAGGCTTTTACCACGGCTGCCTCAAAGTTGGAGAAGATTGGATATGCTGGCTCAGTTGATTCTGAAAATGAGACTGCATCAGTGGAATCAAAGGTCGGTAAAGAGACAATTGACGTGAAGGAAGTTAAGCGAGTGGATAACATTCTTGCATCCTTGCAACACAAGCTACCACCAGCTCCGCCTCCACCACCTTTTCCCGAAGGGTATGTTCCGCCTCCAACTGCAGAGACTGAGAAAAGCACTGAAACTCAGGAAGCAACAGAGTCGCAAGCTCCCTCTGTTGATCCCATAATTGATCAAGGACCTGCAAAAAGAATGAAATTTTGA 756 0.4881 MATAGPGAMMEGVAAAQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSLHPLDPSQLSKMTGTEYVLSEVMEPHLFLIRKQKRDSPDKVTPMLAYYILDGSIYQAPQLCNVFAARIGRALYHIQKAFTTAASKLEKIGYAGSVDSENETASVESKVGKETIDVKEVKRVDNILASLQHKLPPAPPPPPFPEGYVPPPTAETEKSTETQEATESQAPSVDPIIDQGPAKRMKF* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02077 251 Pfam MED6 mediator sub complex component 26 151 IPR007018 GO:0003712|GO:0006357|GO:0016592
Rops4g02077 251 MobiDBLite consensus disorder prediction 219 237 - -
Rops4g02077 251 PANTHER MED-6-RELATED 11 251 IPR007018 GO:0003712|GO:0006357|GO:0016592
Rops4g02077 251 MobiDBLite consensus disorder prediction 198 214 - -
Rops4g02077 251 FunFam Mediator of RNA polymerase II transcription subunit 6 20 149 - -
Rops4g02077 251 Gene3D Mediator complex, subunit Med6 20 149 IPR038566 -
Rops4g02077 251 PIRSF MED6_meta/plant 12 251 IPR016820 GO:0003712|GO:0006357|GO:0016592
Rops4g02077 251 MobiDBLite consensus disorder prediction 196 251 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED6 Rops4g02077 Med6 7e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02077 K15128 - gmx:100792248 433.721