Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02067 ATGGATGATCTGAATTGGGATGCCTCACATCTTGAAACCAACATGTGGAATACTCATCAGCAACAAGGCTTTGAAGGAGGCTACCCCATATCCAACTTAAATTCAAGTGTTCTTAATCAAATACAAGAGATGCAAAAAGCTCAAACAGGTCATGCATATTCAAATTCAGCAGTTGAGACCACAAGTTCAGAGATAATGGAAGTGAAGCCCAGCACAAATGTGTCACAACATGCAGTAACCATGACAGTGAAATCAGGAGCTGGATCCAGTTGGGAAGAGGCTTTAACATCCCAATCATGCATGTCCCTTTCAGTCAATGGACCTTACAATATGAACATGATTAGCAACTACATGCCAGATTTCAACATGGACCACCACCAACATCTTGTCAATGGCTCCCAAAATGGGAAAGGTGCCTGCTCTCTTGAGTCTTTTGATTGTTTGCTTTCAGCTACTAATAGCAACACAGACACTTCTGTCGAAGATAATGGGATTTCAATGATTTTATCAGACTGTGGAAACTTATGGAACTTTGCAGCTTCCTCTGGTGAATCTGAGAGTAATGCTGGTAAAAACAAAGACTTGCAGTGTCCACTCAATGAACATGATGAAACACTGTCTCAAAGCTCCTCAGATCAATACATCAATCAAGGAAAAACAATAGAATCCAAGGATAATTGCTCAAAGAGGAGTAATGATCAATCTGAGATGATCAAAGTTGGTGCCAGTGATCCTTACTTCAGTATTGTTCAGAAATCTTCTTCCACTGAAGGTGATTTCAGACTTATCTCAGATAATCCACAAAAATGCAAGAAACCCAGATGGGATAAGGGTCCCCTTTCATCTAATATCAATTTCCAGCAACCAAATTCATCTATGTCTTCTTCAGTTGAAGAACCTGATCCAGAGGCCATAGCACAAATGAAGGAAATGATATATAGGGCTGCAGCTTTTAGGCCAGTGAACTTGGGCTTGGAAGTGGTGGAAAAGCCTAAAAGGAAGAATGTAAGGATGTCAACTGATCCACAAACTGTGGCTGCAAGGCAAAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTACAGAAGCTTGTGCCTGGTGGAAGTAAGATGGACACTGCATCAATGCTTGATGAAGCTGCAAACTACCTCAAGTTTCTAAAGTCACAGGTCAGGGCACTGGAAAGTCCAGGGAACAAAGTTGATGCAATGGATTGTCATCCTACTAGCATTGCCTTCTCTTTCAACCCTTCTTTTTCCAAGCAAACCCCTCTCCCCTTCCAAGGGTTGAAGTGA 1296 0.4159 MDDLNWDASHLETNMWNTHQQQGFEGGYPISNLNSSVLNQIQEMQKAQTGHAYSNSAVETTSSEIMEVKPSTNVSQHAVTMTVKSGAGSSWEEALTSQSCMSLSVNGPYNMNMISNYMPDFNMDHHQHLVNGSQNGKGACSLESFDCLLSATNSNTDTSVEDNGISMILSDCGNLWNFAASSGESESNAGKNKDLQCPLNEHDETLSQSSSDQYINQGKTIESKDNCSKRSNDQSEMIKVGASDPYFSIVQKSSSTEGDFRLISDNPQKCKKPRWDKGPLSSNINFQQPNSSMSSSVEEPDPEAIAQMKEMIYRAAAFRPVNLGLEVVEKPKRKNVRMSTDPQTVAARQRRERISERIRVLQKLVPGGSKMDTASMLDEAANYLKFLKSQVRALESPGNKVDAMDCHPTSIAFSFNPSFSKQTPLPFQGLK* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02067 431 MobiDBLite consensus disorder prediction 269 298 - -
Rops4g02067 431 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 343 397 IPR036638 GO:0046983
Rops4g02067 431 Gene3D - 342 405 IPR036638 GO:0046983
Rops4g02067 431 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 338 387 IPR011598 GO:0046983
Rops4g02067 431 SMART finulus 344 393 IPR011598 GO:0046983
Rops4g02067 431 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 124 418 IPR045843 GO:0003700|GO:0006355
Rops4g02067 431 FunFam BHLH transcription factor 341 404 - -
Rops4g02067 431 Pfam Helix-loop-helix DNA-binding domain 348 387 IPR011598 GO:0046983
Rops4g02067 431 MobiDBLite consensus disorder prediction 280 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02067 Rops-Chr4 46975646 46976941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02067 110 428 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 47.478 5.06e-77 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops4g02067 HLH 9.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02067 - - gmx:100793975 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02067 4 46975646 46976941 Rops4g02067 4 46975646 46976941 ECH
Rops7g00299 7 3804731 3805576 Rops4g02067 4 46975646 46976941 PCT