Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02049 ATGGCGACAGTTCCAGGGCAACTCGTGTGGGAGATCGTGAAGAAGAACAACTCATTTTTGGTAAAAGAGTTTGGAAGGGGCACTCAGAGTGTTCAATTCAGCAAAGAGAGCAACAATCTCTACAATCTCCACTCTTTCAAGCACTCAGGTTTGGCAAACAAGAAAACTGTTACTATTCAGCCTGTGGGTAAAGATCTGTCTGTGTTGTTGGCTACAACCAAGACAAAGAAACAAAACAAGCCTGCTGCTTTGCTTCACAAATCTGTCATGAAGAAGGAGTTCAGGAGAATGGCAAAGGCTGTTGAAAATCAGGTGGCAGATAATTACTACAGGCCTGATCTCAAGAAGGCAGCTCTTGCAAGGTTGAGTGCCGTTCATAGAAGCCTCAAAGTTGCCAAGTCTGGTGTCAAGAAGAGGAATAGACAGGGTGTGAAGATCCGTGGTAGGAAGTGA 453 0.4481 MATVPGQLVWEIVKKNNSFLVKEFGRGTQSVQFSKESNNLYNLHSFKHSGLANKKTVTIQPVGKDLSVLLATTKTKKQNKPAALLHKSVMKKEFRRMAKAVENQVADNYYRPDLKKAALARLSAVHRSLKVAKSGVKKRNRQGVKIRGRK* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02049 150 FunFam 60S ribosomal protein L28 5 133 - -
Rops4g02049 150 Gene3D - 6 133 - -
Rops4g02049 150 Pfam Ribosomal L28e protein family 8 128 IPR029004 -
Rops4g02049 150 PANTHER 60S RIBOSOMAL PROTEIN L28 1 150 IPR002672 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02049 Rops-Chr4 46817091 46819634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02049 1 143 Cytoplasmic Ribosomal Protein Gene Family AT2G19730 74.825 3.89e-77 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02049 K02903 - gmx:100499921 270.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02049 4 46817091 46819634 Rops7g00306 7 3930499 3933683 ECH
Rops4g02049 4 46817091 46819634 Rops4g02049 4 46817091 46819634 ECH
Rops7g00306 7 3930499 3933683 Rops4g02049 4 46817091 46819634 PCT