Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02030 ATGGCTTACTTTGGGAATACGAAAGGTGATTTCTCATGGACTTGTCTGAAGGATTTTGATTTCACTTCTTTCTGTTCACAAAGGAGTGCAATAGACACAATAAATCTACTTTTTGTCTGTGTCTTCTACACATCTTTTCTTATCAGTTTAATCAGAAGAAGTTCTTCAAATGAGAGCCACAGAAAAAGCTGGATTTTCCCACTTGTCTCAATCTGTTGTGCTCTAATTAGCATTGCGTATTTTACTATTGGCTTGTGGAATCTCATAGCCAAAACTGGTAACTCTGAGCAGCTGAGCTGGTTAGCTTGCATTATCAGAGGATTCATTTGGATTTCTTTTACGGTTTCTTTGCTTGTTCAGAGATACAAATGGATAAAAATTCAAAACATTATCTGGTGGGCATGCTCATGTGTATTGGTTTCAGCTCTCGACATTGAAATTCTGTTCAAAGATCATGCAATTGAAACTTTTGATATCGTACAGTGGCTTGTACACTTCCTTCTTCTTTTTTGTGCCTTCAAAAATCTTGGTTATTTTGACACTCAAAGTGTCCCAGAATGTTTATCTGAGCCACTGTTAGCTCAGAAAACTGAAACTAAACGAACGGGACTATGCCATGCTTCCTTTCTCAGCAAGTTGATTTTCTCTTGGGTTAATTCTTTACTCAGTCTTGGTTACTCAAAGCCACTAGCTCTTGAAGACATCCCTTCCCTTGTTTCTGAAGATGAAGCAGACTCGGTCTACCAAAGATTTGTGCATGCATGGGAATCACATGTAAGGGAGAGGAACAAGAACAATACCAAAAACTTGGTTTTTGGGTCTATAATTAGAACTCACTTAAAAGAAAACATACTAGTAGCCTTTTATGCATTTCTAAGAACCATTTCTGTTGTAGTTTCACCTCTAATACTCTATGCATTTGTAAACTACTCAAATAGCACTGAGGCAGATCTCAAAGAAGGTCTTTCTCTGGTTGGTTTTCTGATTCTCACCAAAGTGGTTGAGTCTTTGTCCCAGAGACATTGGTTTTTTGACTCTAGGAGGTCAGGAATGAAAATGAGATCAGCTCTGATGGTGGCAGTCTATAAAAAGCAGCTAAAACTTTCAAGCTCAGCAAGGAGAAGACACTCAACTGGTGAAATTGTGAATTACATTGCTGTTGATGCATATAGAATGGGAGAATTTCCATGGTGGTTTCATATAACATGGACTTCTGCATTGCAACTTGTTCTGTCCATTGGTATCCTTTTCAGTGTTGTCGGTGTAGGTGCTCTTCCTGGTTTAGTCCCTCTTCTCATTTGTGGACTTCTCAATGTACCATTTGCAAAGATCCTACAAAATTGTCAGTCACAGTTTATGATTGCACAGGATGAGCGTCTTAGATCAACTTCAGAAATTCTAAATAGTATGAAAATCATTAAGTTACAATCCTGGGAAGATAAATTCAAGAACTTAGTTGAGTCCCTACGTGCTAAAGAGTTCATATGGTTGTCTAAGGCACAGATCTTGAAAGCTTCTGGCTCATTTCTTTATTGGATGTCTCCTACAATCGTTTCTTGTGTTGTTTTCCTCGGATGTGCTCTTTTCAATAGTGCCCCATTGAATGCTGAAACCATTTTCACAGTTCTTGCAACATTGAGGAACATGGGAGAACCTGTTCGAATGATCCCAGAGGCTCTATCTATTATGATCCAAGTTCAGGTCTCCTTTGATCGTCTCAATAGCTTTTTGCTTGATGAAGAGCTTTACAGCGATGATAATGGAAGGAATATAAAGCAATGTTCAGTTAATGCTGTGGAAATTCAAGCTGGCAACTTCATTTGGGATCAGGAATCTGGGTCCCCAACTATAAGAGATGTGAATTTAGAAATCAAATGGGGACAGAAAATTGCAGTTTGTGGGCCAGTTGGAGCTGGAAAATCATCTCTTTTGTATGCAATACTTGGAGAGATTCCTAAGAGTTCAGGAACTGTTAATGTAGGTGGCACCCTAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGACAGTTCGAGATAATATACTCTTTGGCAAGCCAATGGATGAAACAAGATATGAGAATGCCATTAAAGTTTGTGCCTTAGATAAGGATATTAATGATTTTAGCCATGGTGATCTTACAGAAATAGGTCAGAGAGGGATTAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTCGAGCAGTCTACAATGATGCTGACCTCTATCTCCTTGATGACCCTTTCAGTGCAGTTGATGCACACACGGCTGGTATTCTGTTTAATGACTGTGTCATGACTGCTCTAAGAGAGAAAACAGTCATTCTAGTGACTCATCAAGTGGAGTTTCTCTCAGAAGTTGACACAATCTTGGTAATGGAGGGAGGAAAAGTTATTCAATCAGGTAGCTATGACAATCTCCTTACAGCTGGGACAGCCTTTGAACAACTTGTGAGTGCCCATAAAGATGCAATTACAGGGTTGGATCAAGATAGTGAAAATAAAGGAGGTTCTAAAAATGAGGTCATGGCTCATCCAGAAGAGTCTCATGGTTCTTATCTCACTAAAAATCAAAGTGAGGGGGAGATTTCTACCAAGGGTCAACTTGGGGTACAACTTACAGAAGAAGAAGAAGAAAAGGAGATTGGTGATGTTGGATGGAAGCCATTCTGGGATTATATTTCTTTTTCCAAGGGGAAATTCATGCTGTGTTGGATCATGTTTGCACAATCAGCTTTTATGGCTTTGCAGACTGCATCAACTTATTGGCTTGCTATAGCTATTGAAATTCCAAAAGTAACTAGTGTCCCCTTGATTGGAGTTTACTCATTAATTTCATTATCTAGTTCTGCATTTGTATATGTAAGGTCTATATTGACAGCATATCTTGGACTAAAAGCTTCTACAGCCTTCTTCTCAAGTTTCACTACTGCTATCTTCAATGCTCCTATGTTGTTCTTCGACTCAACCCCTGTAGGAAGGATTTTAACCCGAGCTTCATCAGATTTGAGTATTTTGGACTTTGATATACCTTATTCCATCACTTTTGTAGCATCTGTAACAATTGAAATTCTGGTGATAATTTGTATAATGGCTTCAGTCACATGGCAAGTTCTCATTGTTGCTGTTCCTGCAATGGTTGCTTCAAAGTTTATTCAGGGATATTATCAAGCCTCAGCAAGCGAACTAATAAGGATTAATGGAACCACAAAAGCTCCAGTCATGAATTTTGCAGCTGAGACATCACTTGGAGTGGTTACAGTAAGAGCATTCAACATGGTAGACAGATTTTTCAAAAACTACTTAAAACTTGTGGACACAGATGCAACATTGTTCTTTCATTCTAATGTGGCCATGGAATGGGTAGTTTTAAGGATTGAAGCACTTCAAAATTTGACAGTCTTCACTGCAGCTTTCTTACTTATTCTACTTCCCCAGGGATATGTATCCCCAGGCCTTGTGGGACTGTCTCTTTCTTATGCTTTCACCTTGACAGGTGCCCAAATATTTTTGACTAGATGGTTTTGCAACTTATCAAACTATATCATCTCAGTTGAAAGAATCAAGCAATTCATTCACATACCAGCGGAGCCTCCTGCCATTGTGGAGGATAAGAGGCCTCCATCTTCATGGCCCTTCAAGGGAAGGATTGATCTTCAAGCCTTAGAGATTAGATACCGTCCAAATGCTCCACGAGTTCTTAAGGGTATCACTTGTACGTTTAAAGAAGGGAGTAGAGTGGGAGTAGTAGGAAGGACTGGCAGTGGAAAAAGTACTCTTATAAGTGCTTTGTTTCGCTTAGTTGAGCCTTCAAATGGTGATATTCTTATTGATGGGATTAACATATGCTCAATGGGGTTAAAGGATTTGAGAATGAAGCTAAGCATCATCCCTCAAGAACCAACTCTTTTCAAGGGTAGCATTAGAACCAACTTGGACCCTCTAGGCCTGTACTCAGATGAGAAAATATGGAAGGCTTTGGAGAAATGTCAACTTAAGGGAACAATCACCAATCTACCAAGTCTCTTGGACTCTTCTGTGAGTGATGAAGGTGGAAATTGGAGCTTGGGACAACGCCAACTGTTTTGTCTTGGAAGAGTACTACTTAAGAGGAACAGAATTCTTGTTCTGGATGAAGCTACTGCCTCTATTGACGCTGCCACGGATGCCATTCTACAACAAGTAATTAGACAAGAATTTGCAGAATGCACAGTTATAACCGTTGCTCACAGAGTTCCAACTGTAATAGATAGTGACATGGTCATGGTCCTGTCTTATGGGAAATTGGTGGAATATGATGAGCCTTCAAAGCTAATGGAGACCAATTCTTCGTTCTCTAAGCTGGTAGCTGAATATTGGTCCAGCTGCAGGAAGAATTCCTCCCAAATATTAGTAGGCAGCAACATTGAATAA 4419 0.3956 MAYFGNTKGDFSWTCLKDFDFTSFCSQRSAIDTINLLFVCVFYTSFLISLIRRSSSNESHRKSWIFPLVSICCALISIAYFTIGLWNLIAKTGNSEQLSWLACIIRGFIWISFTVSLLVQRYKWIKIQNIIWWACSCVLVSALDIEILFKDHAIETFDIVQWLVHFLLLFCAFKNLGYFDTQSVPECLSEPLLAQKTETKRTGLCHASFLSKLIFSWVNSLLSLGYSKPLALEDIPSLVSEDEADSVYQRFVHAWESHVRERNKNNTKNLVFGSIIRTHLKENILVAFYAFLRTISVVVSPLILYAFVNYSNSTEADLKEGLSLVGFLILTKVVESLSQRHWFFDSRRSGMKMRSALMVAVYKKQLKLSSSARRRHSTGEIVNYIAVDAYRMGEFPWWFHITWTSALQLVLSIGILFSVVGVGALPGLVPLLICGLLNVPFAKILQNCQSQFMIAQDERLRSTSEILNSMKIIKLQSWEDKFKNLVESLRAKEFIWLSKAQILKASGSFLYWMSPTIVSCVVFLGCALFNSAPLNAETIFTVLATLRNMGEPVRMIPEALSIMIQVQVSFDRLNSFLLDEELYSDDNGRNIKQCSVNAVEIQAGNFIWDQESGSPTIRDVNLEIKWGQKIAVCGPVGAGKSSLLYAILGEIPKSSGTVNVGGTLAYVSQTSWIQSGTVRDNILFGKPMDETRYENAIKVCALDKDINDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADLYLLDDPFSAVDAHTAGILFNDCVMTALREKTVILVTHQVEFLSEVDTILVMEGGKVIQSGSYDNLLTAGTAFEQLVSAHKDAITGLDQDSENKGGSKNEVMAHPEESHGSYLTKNQSEGEISTKGQLGVQLTEEEEEKEIGDVGWKPFWDYISFSKGKFMLCWIMFAQSAFMALQTASTYWLAIAIEIPKVTSVPLIGVYSLISLSSSAFVYVRSILTAYLGLKASTAFFSSFTTAIFNAPMLFFDSTPVGRILTRASSDLSILDFDIPYSITFVASVTIEILVIICIMASVTWQVLIVAVPAMVASKFIQGYYQASASELIRINGTTKAPVMNFAAETSLGVVTVRAFNMVDRFFKNYLKLVDTDATLFFHSNVAMEWVVLRIEALQNLTVFTAAFLLILLPQGYVSPGLVGLSLSYAFTLTGAQIFLTRWFCNLSNYIISVERIKQFIHIPAEPPAIVEDKRPPSSWPFKGRIDLQALEIRYRPNAPRVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPSNGDILIDGINICSMGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDEKIWKALEKCQLKGTITNLPSLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDAATDAILQQVIRQEFAECTVITVAHRVPTVIDSDMVMVLSYGKLVEYDEPSKLMETNSSFSKLVAEYWSSCRKNSSQILVGSNIE* 1473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02030 1472 Pfam ABC transporter 1236 1384 IPR003439 GO:0005524
Rops4g02030 1472 Gene3D ABC transporter type 1, transmembrane domain 272 574 IPR036640 GO:0005524|GO:0016020
Rops4g02030 1472 CDD ABCC_MRP_domain2 1217 1437 - -
Rops4g02030 1472 MobiDBLite consensus disorder prediction 853 872 - -
Rops4g02030 1472 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 284 565 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops4g02030 1472 CDD ABCC_MRP_domain1 599 799 - -
Rops4g02030 1472 ProSitePatterns ABC transporters family signature. 724 738 IPR017871 GO:0005524|GO:0016887
Rops4g02030 1472 SMART AAA_5 1245 1437 IPR003593 GO:0016887
Rops4g02030 1472 SMART AAA_5 626 799 IPR003593 GO:0016887
Rops4g02030 1472 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 206 1455 - -
Rops4g02030 1472 FunFam ABC transporter C family member 10 267 581 - -
Rops4g02030 1472 CDD ABC_6TM_ABCC_D1 285 573 IPR044746 GO:0140359
Rops4g02030 1472 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 601 822 IPR003439 GO:0005524
Rops4g02030 1472 CDD ABC_6TM_ABCC_D2 903 1194 IPR044726 GO:0140359
Rops4g02030 1472 FunFam ABC transporter C family member 3 1202 1453 - -
Rops4g02030 1472 Gene3D - 575 843 IPR027417 -
Rops4g02030 1472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1209 1452 IPR027417 -
Rops4g02030 1472 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1221 1453 IPR003439 GO:0005524
Rops4g02030 1472 FunFam Multidrug resistance protein associated1 578 842 - -
Rops4g02030 1472 SUPERFAMILY ABC transporter transmembrane region 274 579 IPR036640 GO:0005524|GO:0016020
Rops4g02030 1472 Gene3D - 1202 1453 IPR027417 -
Rops4g02030 1472 FunFam ABC transporter C family member 5 868 1200 - -
Rops4g02030 1472 MobiDBLite consensus disorder prediction 830 848 - -
Rops4g02030 1472 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 907 1182 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops4g02030 1472 Pfam ABC transporter transmembrane region 936 1169 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops4g02030 1472 Pfam ABC transporter transmembrane region 288 545 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops4g02030 1472 SUPERFAMILY ABC transporter transmembrane region 890 1201 IPR036640 GO:0005524|GO:0016020
Rops4g02030 1472 Gene3D ABC transporter type 1, transmembrane domain 873 1200 IPR036640 GO:0005524|GO:0016020
Rops4g02030 1472 MobiDBLite consensus disorder prediction 830 872 - -
Rops4g02030 1472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 597 821 IPR027417 -
Rops4g02030 1472 Pfam ABC transporter 618 751 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02030 Rops-Chr4 46512479 46519951 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02030 599 864 Calmodulin-binding Proteins AT2G36910 25.874 1.40e-22 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02030 - - gmx:100784827 2369.35