Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02029 ATGTTCAAAGATCATGCAGTTGAAATTTTTGATATGGTACAATGGCTTGTACACTTGTTACTTCTCTTCTGTGCCTTCCAAAATCTTGATTATTTTGTCACTTCCCAAAGTATAACAGATACTGCTACCAGTTTATCTGAGCCACTGTTAGCTCAGAAAGTTGAAATTAAACAAACAAGACTAGGCCATGCTACCTTTCTCAGTAAGTTGACTTTCTCATGGGTTAATTCTTTACTCAGTTTGGGTTACTCAAAACCACTAGCTCTTGAAGACATCCCTTCTCTTCTTTCTGAAGATGAAGCAGACTCAGCCTACCAAAACTTCATGCATGCATGGGAATCCCTTGTAAGAGAGAGGAGCACGAACAATACAAAAAACTTGGTTCTTTGGTCGGTAGTTAGAACTTACTTAAAAGAAAACATACTAATAGCATTTTATGCATTACTCAGAACTCTTTCTGTTGTAGTTTCTCCTCTAATACTATATGCTTTTGTAAACTACTCAAATAGCACTGAGGCTGATCTCAGAGAAGGTTTTTCCTTAGTGGGTTTTCTGATTCTCACCAAAGTGGTTGAGTCTTTGCCCCAGAGACACTACAGTTTTAACTCAAGGAGGTCAGGAATGAAAATGAGATCAGCTTTAATGGTGGCAGTTTATCAAAAACAGCTAAAGCTTTCAAGCTCAGCAAGGAGAAGGCACTCAACAGGTGAAATTGTGAATTACATTGCAGTTGATGCTTATAGAATGGGAGAATTTCCATGGTGGTTTCATGTAACATGGACTTCTGCATTGCAAATTGTTCTCTCTATTGGTCTCCTTTTCAGTGTTGTCGGTGTAGGTGTTCTTCCTGGTTTAGTCCCTCTTCTCATTTGTGGACTTCTCAATGTACCATTTGCAAAGATCCTACAAAATTGTCAGTCACAGTTTATGATTGCACAGGATGAGCGTCTTAGATCAACTTCAGAAATTCTAAATAGTATGAAAATCATTAAGTTACAATCCTGGGAAGATAAATTCAAGAACTTAGTTGAGTCCCTACGTGCTAAAGAGTTCATATGGTTGTCTAAGGCACAGATCTTGAAAGCTTCTGGATCATTTCTTTATTGGATGTCTCCTACCATCGTTTCTTGTGTTGTTTTCCTCGGATGTGCTCTTTTCAATAGTGCCCCATTGAATGCTGAAACCATTTTCACAGTTCTTGCAACATTGAGGAACATGGGAGAACCTGTTCGAATGATCCCAGAGGCTCTATCTATTATGATCCAAGTTCAGGTCTCCTTCGATCGTCTCAATAGCTTTTTGCTTGATGAAGAGCTTTACAGCGATGATAATGGAAGGAATATAAAGCAATGTTCAGTTAATGCTGTGGAAATTCAAGCTGGCAACTTCATTTGGGATCAGGAATCTGGGTCCCCAACTATAAGAGATGTGAATTTAGAAATCAAATGGGGACAGAAAATTGCAGTTTGCGGGCCAGTTGGAGCTGGAAAATCATCTCTTTTGTATGCAATACTTGGAGAGATTCCTAAGAGTTCAGGAACTGTTAATGTAGATGGCACCCTAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGACAGTTCGAGATAATATAATCTTTGGCAAGCCAATGGATGAAACACGATATGAGAATGCCATTAAAGTTTGTGCCTTAGATAAGGATATTAATGATTTTAGCCATGGTGATCTTACAGAAATAGGTCAGAGAGGGATTAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTCGAGCAGTGTACGGTGATGCTGATATATATCTCCTTGATGATCCTTTCAGTGCAGTTGATGCACACACTGCTGCCACTCTTTTCAATGACTGTGTCATGACGGCTCTAAGAGATAAAACAGTCGTTCTAGTTACTCATCAAGTGGAGTTTCTTTCTGAAGTTGATACAATCCTGGTAATTGAGGGAGGAAAGGTTACCCAATCAGGCAATTATAAAGATCTCCTGACAGCTGGCACAGCCTTTGAACAACTTGTAAACGCTCATAAGGATGCATTAATAGAACTGGATCAAACTAATGAAGGTTCTGAAATTGAGTCTCATGGTTTTTATCTCACTAAAAATCAAAGTGAGGGGGAGATTTCTACCAAGGGTCAACTTGGGGTACAACTTACACAAGAAGAAGAAAAAGAGATTGGTGATGTTGGCTGGAAACCATTGTTGGATTATTTTTCCTTTTCTAAGGGATCTTTCATGTTGTGTTGGATCACATTAGTACAATCTGCTTTTGTTGCTTTGCAGACTGCATCAACTTTTTGGCTTGCTTTAGCCATTGAAATTCCAAAAGTAACTAGTGCCACCTTGATTGGAGTTTACTCCATAATTTCATTTGTTAGTGCTGCATTTGTATATCTAAGGTCTCTTTGGGCTGCAAATCTTGGACTAAAAGCTTCTACATCCATCTTCGCAAGTTTCACTACGGCTATCTTCAATAGTCCAATGTTGTTCTTTGATTCAACCCCTGTAGGAAGGATTTTAACCCGAGCTTCATCAGATTTGAGTATTTTGGACCTTGATGTACCATATTCCATCACTTTTGTAGCATTTGGAGCAATTGAAATTCTGGTGACAATTTGTGCAATGGTCTCAGTCACATGGCAAGTTCTCATTGTTACTGTTCCTGCTATGGTCGCATCAAAATATATTCAGGGATATTATCAAGCCTCAGCAAGGGAACTAATGAGGATCAATGGAACCACAAAAGCTCCAGTCATGAATTTTGCTGCTGAGACATCACTTGGAGCGGTTACTGTAAGAGCATTCAACATGGTAGACAGATTTTTCAAAAACTACTTGAAACTTGTGGACACAGATGCAACACTGTTCTTTCATTCTAATGTGGCCATGGAATGGTTAGTTTTAAGGATTGAAGCACTTCAAAATTTGACAGTCTTCACTGCAGCTTTATTACTTATTCTACTTCCTAAGGGATACATGCCCTCAGGTCTTGTGGGACTGTCTCTTTCTTATGCTTTCTCCTTGACAGGAGCCCAAATATTTTGGACTAGATGGTTTTGCAACTTATCAAATCATATTATCTCAATTGAAAGAATCAAGCAATTCATTCACATACCTGCAGAGCCTCCTGCCATTGTGGAGGATAAGAGGCCTCCATCTTCATGGCCTTCCAAGGGTAGCATTGATCTTCAAGCACTTGAGATTAGATATCGTCCAAATGCTCCATTAGTCCTTAAAGGTATCACTTGTACCTTTAAAGAAGGGAGTAGAGTGGGAGTTGTAGGAAGGACTGGAAGTGGAAAAAGTACACTTATAAGTGCTTTGTTTCGCTTAGTTGAGCCTTCAAGTGGTGATATTCTTATTGATGGGATTAACATATGCTCAATGGGGTTAAAGGATTTGAGAATGAAGTTAAGCATTATCCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGAACCAACTTGGACCCTCTAGGCCTATACTCAGATGATGAAATATGGAAGGCTTTGGAGAAATGTCAACTTAAGGAAACAATCAGCAGGCTACCAAGTCTCTTGGACTCTTCAGTGAGTGCTGAAGGTGGAAATTGGAGCTTGGGACAGTGCCAACTATTTTGTCTTGGAAGAGTACTACTTAAGAGGAACAAAATTCTTGTTTTAGATGAAGCTACTGCCTCCATTGACACTGCAACAGATGCCATTCTACAACAAGTAATTAGACAAGAATTTGCAGAATGCACAATTATAACTGTAGCTCACAGAGTTCCAACTGTAATAGATAGTGACATGGTCATGGTCCTGTCTTATGGGCAACTGGTGGAATATGATGAGCCTTCAAAACTTTTAGGGACCAACTCTTCATTCTCTAAGCTGGTCGCTGAATATTGGTCAAGCTGCAAAAGGAATTCCCCTCATAATATCAGCAGGCAGCAATATTGA 3954 0.3943 MFKDHAVEIFDMVQWLVHLLLLFCAFQNLDYFVTSQSITDTATSLSEPLLAQKVEIKQTRLGHATFLSKLTFSWVNSLLSLGYSKPLALEDIPSLLSEDEADSAYQNFMHAWESLVRERSTNNTKNLVLWSVVRTYLKENILIAFYALLRTLSVVVSPLILYAFVNYSNSTEADLREGFSLVGFLILTKVVESLPQRHYSFNSRRSGMKMRSALMVAVYQKQLKLSSSARRRHSTGEIVNYIAVDAYRMGEFPWWFHVTWTSALQIVLSIGLLFSVVGVGVLPGLVPLLICGLLNVPFAKILQNCQSQFMIAQDERLRSTSEILNSMKIIKLQSWEDKFKNLVESLRAKEFIWLSKAQILKASGSFLYWMSPTIVSCVVFLGCALFNSAPLNAETIFTVLATLRNMGEPVRMIPEALSIMIQVQVSFDRLNSFLLDEELYSDDNGRNIKQCSVNAVEIQAGNFIWDQESGSPTIRDVNLEIKWGQKIAVCGPVGAGKSSLLYAILGEIPKSSGTVNVDGTLAYVSQTSWIQSGTVRDNIIFGKPMDETRYENAIKVCALDKDINDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYGDADIYLLDDPFSAVDAHTAATLFNDCVMTALRDKTVVLVTHQVEFLSEVDTILVIEGGKVTQSGNYKDLLTAGTAFEQLVNAHKDALIELDQTNEGSEIESHGFYLTKNQSEGEISTKGQLGVQLTQEEEKEIGDVGWKPLLDYFSFSKGSFMLCWITLVQSAFVALQTASTFWLALAIEIPKVTSATLIGVYSIISFVSAAFVYLRSLWAANLGLKASTSIFASFTTAIFNSPMLFFDSTPVGRILTRASSDLSILDLDVPYSITFVAFGAIEILVTICAMVSVTWQVLIVTVPAMVASKYIQGYYQASARELMRINGTTKAPVMNFAAETSLGAVTVRAFNMVDRFFKNYLKLVDTDATLFFHSNVAMEWLVLRIEALQNLTVFTAALLLILLPKGYMPSGLVGLSLSYAFSLTGAQIFWTRWFCNLSNHIISIERIKQFIHIPAEPPAIVEDKRPPSSWPSKGSIDLQALEIRYRPNAPLVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPSSGDILIDGINICSMGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKALEKCQLKETISRLPSLLDSSVSAEGGNWSLGQCQLFCLGRVLLKRNKILVLDEATASIDTATDAILQQVIRQEFAECTIITVAHRVPTVIDSDMVMVLSYGQLVEYDEPSKLLGTNSSFSKLVAEYWSSCKRNSPHNISRQQY* 1318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02029 1317 FunFam ABC transporter C family member 5 714 1046 - -
Rops4g02029 1317 CDD ABC_6TM_ABCC_D1 142 430 IPR044746 GO:0140359
Rops4g02029 1317 Pfam ABC transporter 475 608 IPR003439 GO:0005524
Rops4g02029 1317 Pfam ABC transporter transmembrane region 783 1014 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops4g02029 1317 Pfam ABC transporter transmembrane region 143 402 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops4g02029 1317 FunFam Multidrug resistance protein associated1 435 699 - -
Rops4g02029 1317 ProSitePatterns ABC transporters family signature. 581 595 IPR017871 GO:0005524|GO:0016887
Rops4g02029 1317 Gene3D - 432 698 IPR027417 -
Rops4g02029 1317 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1067 1299 IPR003439 GO:0005524
Rops4g02029 1317 CDD ABCC_MRP_domain1 456 656 - -
Rops4g02029 1317 CDD ABCC_MRP_domain2 1063 1283 - -
Rops4g02029 1317 Gene3D - 1048 1299 IPR027417 -
Rops4g02029 1317 Gene3D ABC transporter type 1, transmembrane domain 128 431 IPR036640 GO:0005524|GO:0016020
Rops4g02029 1317 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 63 1303 - -
Rops4g02029 1317 Gene3D ABC transporter type 1, transmembrane domain 716 1046 IPR036640 GO:0005524|GO:0016020
Rops4g02029 1317 SMART AAA_5 1091 1283 IPR003593 GO:0016887
Rops4g02029 1317 SMART AAA_5 483 656 IPR003593 GO:0016887
Rops4g02029 1317 SUPERFAMILY ABC transporter transmembrane region 129 436 IPR036640 GO:0005524|GO:0016020
Rops4g02029 1317 CDD ABC_6TM_ABCC_D2 747 1040 IPR044726 GO:0140359
Rops4g02029 1317 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 458 679 IPR003439 GO:0005524
Rops4g02029 1317 Pfam ABC transporter 1082 1230 IPR003439 GO:0005524
Rops4g02029 1317 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 753 1015 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops4g02029 1317 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 141 422 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops4g02029 1317 FunFam ABC transporter C family member 3 1048 1299 - -
Rops4g02029 1317 SUPERFAMILY ABC transporter transmembrane region 736 1047 IPR036640 GO:0005524|GO:0016020
Rops4g02029 1317 FunFam ABC transporter C family member 10 124 438 - -
Rops4g02029 1317 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 454 679 IPR027417 -
Rops4g02029 1317 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1055 1298 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02029 Rops-Chr4 46497822 46502949 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02029 456 670 Calmodulin-binding Proteins AT2G36910 27.511 1.86e-21 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02029 - - gmx:100784827 2137.46