Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02028 ATGGCATACTTTCAGAGCTCACTAGGTGGACATTCCTTGATTTGTGGAGGAGAGTTTAATCTGGCTTCTTTCTGTGTTCAAAGAATCATAATAGATGGAGTAAATCTGTTCTTCTTCTGTGTTTTATGCTTATTTATGCTGATAGGTTTATGTAGAAAACACCATTCAAGTGATGTCAGTAGAAAGGACTGTGTTTTAGTGATTACATCAATCTTTTGTTTTCTTTCTAGCATTTTGTATTTTGGCAAAGGTTTGTATATTTTCATAGATCAAAATGGAAAATTAGATAATTTAAGTTGGGTGGCTACTGCTATCAGGGGACTAGTTTGGACTTCTCTTGCAGTTTCATTGCTTACTCAAAGGAGCAAATGGATCATATGTCTAAACTCTGTTTGGTGGGTGTGCTTAAGTGCATTAATTTCTGCTCTGAATATTGAAATGCTTGTGATAGTGCACAGTATTCTTGTGTTGGATTTGCTGTCTTGGCTTGTGAGCTTCCTTCTTCTCCTTTGTGCTTTCAGAAACCATGGTTACTTTATTTCCAAACATTCCCAAAATAACACAATGTTTGAACCATTGTTGTGTGAAACTGAAAAGGAAGAAATAAGCCACAAAGGATTATGTCAGGCCAATTTTTTTAGCAAATTTACATTTTCATGGATTAACCCTTTACTTTCTTTGGGTTATAAAAAGCCATTAGCTCTTGAAAACATCCCTCCTCTACCTCCTGAAGACAAAGCTAACATGTCCTACCAAAAGTTTGCCAGTGCATGGGATTCCTTGTTAAGGAGGAGTAGCTCAAACAATCCCAAGAATTTGGTTATCTGGACCATGTCAAGAGCCTTTTTGAAAGAGAATATTTACACTGCAATCTATGCATTAGCTAGGACTATTTGTGCAGCAGTTTCTCCTTTGATAGTCTATGCCTTTGTAAACTATGCAAGTCGCAGTGAAGATGATTTACATGAGGGTCTTTCTATATTGGGGTGCCTGGTTCTTGTCAAATTGGTGGAGTCTGTGTGTGAGAGGCAGTGGTACTTCGACTCACGGAGGTCAGGTTTGAGAATGAGATCAGCATTAATGGTAGCTGTGTATGAAAAGCTGTTGAAGATTTCAAGCTTGGGAAGGAGAAGGCACTCAACTGGTGAGATTGTGAATTACATAGCAGTTGATGCCAACCGGATGGGAGAATTCTTGTGGTGGTTCCATACAGGATGGAGCTTTGTATTGCAACTTTTCTTAGCCATTGGTGTCCTTTTTTGGGTTGTGGGTCTTGGTGCTCTTCCTGGTTTAGTTCTTCTTCTCATATTTGGAGTTTTCAATGCTCCATTTGTAAAGAAGATAAAAATTTGTCAGTCACAAGTCCTGATTTCACAAGATCAACGACTCAGGGCAACTTCAGAGGTCCTGAACAATATCAAAATTATTAAATTACAATCTTGGGAGGAGAAATTTAAGAACATGATTGAGTCACTTCGTGCTAGTGAATTCAAATGGTTGGCCGAGACACAGTTCACAAAGGCTTTAGGATCGGTATTGTATCATATTTCTCCAACCATTATTTGTGCAGTTGTTTTATTAGGATGCACCCTCTTTGTGACTGCTCCATTAAATGCTGCCACGATCTTCACAGTTCTTTCTACATTGAGAAGCATGGCAGAACCTGTCAGATTCATACCCGAGGCTTTTTCTGCTATCATCCAAGTTAAAGTCTCATTTGACAGGCTAAACACTTTTCTCCTTGATGATGAGCTAAAAACTTATCAAAAGAGGAGCATTTCAATTCCAAAATCAGATAAATGCGTTGAAATAGAGTCAGCTACTTTCAGTTGGGATGAGGAATCAGTGACCCCTACTTTGAGAGACATCAATTTAGACATCAAACGGGGGCAAAAAGTAGCAGTTTGTGGGCCAGTTGGAACTGGCAAGTCTTCTTTATTGCATGCTATCCTTGGAGAGATGCCTAAAATTTCAGGAACTGTTAATTTGCATGGAGCAGTTGCCTATGTTTCTCAAACTTCTTGGATCCAGAGTGGAACTATTCGTGATAACATACTCTTTGGAAAATCAATGGAAAGAAATAGATATGATAATGCCATTAAAGCATGCGCTTTGGATAAGGATATAAATGGTTTTAGCCATGGTGATCTTACAGAAATAGGTCAGAGAGGGCTCAACTTGAGTGGAGGACAGAAGCAGAGAGTTCAACTTGCCCGTGCTGTCTATAGCGATGCTGATATATATCTTCTTGATGACCCTTTCAGTGCAGTAGATGCACATACTGCCGCAATTCTGTTCCATGACTGTGTCATGAGTGCTCTCAGAGAGAAAACAGTCATCCTAGTGACGCATCAAGTAGAGTTTCTAACAGAAGTTGATAAAATTCTGGTTATGGAGGGTGGGTGTATAACTCAAGCAGGAAGCCATGAGGAGTTGTTAACTTCTGGGACAACCTTTGAGCAACTTATGAATGCTCATAGAGATGCAATAACGGTACTGGGTACACGTCATCAAAACCAAGAAAAATGTCAAGTAGATAGAGTTAATAGTGAAAAAAGGCATCATGGATGTGATCCCACTAACAAAAACAGTAATGGAGAAATTTGTGAGACAAGTTTTGAAGGGCAACAACTTACTCAAGAAGAACAAAGAGAAACGGGAGCTGCTGGATGGAAACTGTTCCTGGATTATGTTATAATCTCCAAGGGACTGTTTCTTCTGTGTTTAACCTTATTGGCTTTGATAGGTTTTGCTGTTGTTTTGACTGCCTCATCTTATTGGCTTGCCATAGCCAGTGAAATTCCAAGCATTACTAGTGGCATGCTGGTTGGAGTTTACACTGCAATGTCACTTTTTAGTGCTACGTTTGTTTACTTGAGGTCTCTCTTTGTATCTCATCTAGGATTAAAGGCTTCGAAAGCCTTCTTCTCAGATTTCACTTCTGCCATTTTCAATGCTCCAATGTCATTCTTTGACTCAACTCCTGTTGGAAGAATTTTGACTCGAGCTTCATCAGATTTGGCTACATTGGATTTTGATCTACCTTTTTGCACAGTCTTTGTAGCACAAACTGGAGTTGAACTTCTGACAGGAATTGTGATTATGTCTTCAGTCACATGGCAAGTTCTTATAGTTGCCATTCTAGCTGCAGTAGCAGGATACTACATTAAGGGCTACTATCAAGCCTCTGCAAGGGAACTAGTAAGAATTAGTGGAACAACAATAGCTCCAGTTTTGAATTATACAACGGAGACATCAGCAGGAGTGGTCACAGTAAGAGCTTTCAAGATGGTGGACAGATTCTTCCAAAATTTCCTACATCTAGTTGACACAGATACTACACTTCACTTGCATACTAATGCTGCTATGGAGTGGTTACTATCAAGAATGGAAATACTTCTAAATTTGATCTTTTTCACTGCAGCTTCTCTATTTGTATTTCTTCCCAGGGGATCTATTGCTCCAGGGCTTGTGGGACTTTCTCTGTCTTATGCCATGTCATTGTCAAGATCCCAGATGTATTTTACTAAGTGGTCTTGTATCTTATCAAACTCCATCATCTCTGTTGAACGAATAAAGCAATTCATGCAGATACCACAAGAGCCTCCAAAAATATTGGAGGATAAAAGGCCACCATCTTCATGGCCTTCCAAGGGCAGGATAGAGTTTCAAGATTTGAAGGTTAGATATCGTCCAAATGCTCCATTAGTTCTGAATCGAATCACTTGTACTTTCAAAGAAGGGACTAGAGTAGGAGTTGTAGGAAGGACTGGGAGCGGAAAAACAACACTTCTAAGTGCATTGTTTCGTTTGGTAGAGCCTTCAAGCGGTAGAATTCTTATAGATGGGCTTAACATATGCTCAATAGGCCTGAAGGATTTAAGAGTGAAGCTAAGCATCATCCCTCAAGAACCAATTCTTTTCAAGGGCAGTGTTCGAACCAACTTGGATCCACTAGACCAATACTCTGATGATGAGATATGGAAGGTTTTAGAAATGTGTCAACTCAAGGAATCTATATGTGGACTACCATATCTTTTGGACTCATCAGTGAGTAATGAAGGTGAAAATTGGAGTGTGGGCCAACGCCAATTATTTTGCCTGGGAAGAGTCCTTCTAAAAAGGAATAGAATTTTAGTTCTGGATGAAGCAACAGCTTCCATTGATTCTGCAACAGATGCCATTTTACAGAAAATCATCAGGCAGGAATTCTCTGAATGCACCGTTATAACTGTGGCTCACAGGGTTCCAACTGTAATTGACAGTGACATGGTCATGGTTCTGTCTTATGGCAAACTGGTGGAGTATGATGAGCCTTCAAAACTTATGGAGGACAATGGTTCTTCATTCTCCAAGCTTGTAGCTGAATACTGGTCCAGCTGCAGCAGGAACTCTTTCTAA 4401 0.3972 MAYFQSSLGGHSLICGGEFNLASFCVQRIIIDGVNLFFFCVLCLFMLIGLCRKHHSSDVSRKDCVLVITSIFCFLSSILYFGKGLYIFIDQNGKLDNLSWVATAIRGLVWTSLAVSLLTQRSKWIICLNSVWWVCLSALISALNIEMLVIVHSILVLDLLSWLVSFLLLLCAFRNHGYFISKHSQNNTMFEPLLCETEKEEISHKGLCQANFFSKFTFSWINPLLSLGYKKPLALENIPPLPPEDKANMSYQKFASAWDSLLRRSSSNNPKNLVIWTMSRAFLKENIYTAIYALARTICAAVSPLIVYAFVNYASRSEDDLHEGLSILGCLVLVKLVESVCERQWYFDSRRSGLRMRSALMVAVYEKLLKISSLGRRRHSTGEIVNYIAVDANRMGEFLWWFHTGWSFVLQLFLAIGVLFWVVGLGALPGLVLLLIFGVFNAPFVKKIKICQSQVLISQDQRLRATSEVLNNIKIIKLQSWEEKFKNMIESLRASEFKWLAETQFTKALGSVLYHISPTIICAVVLLGCTLFVTAPLNAATIFTVLSTLRSMAEPVRFIPEAFSAIIQVKVSFDRLNTFLLDDELKTYQKRSISIPKSDKCVEIESATFSWDEESVTPTLRDINLDIKRGQKVAVCGPVGTGKSSLLHAILGEMPKISGTVNLHGAVAYVSQTSWIQSGTIRDNILFGKSMERNRYDNAIKACALDKDINGFSHGDLTEIGQRGLNLSGGQKQRVQLARAVYSDADIYLLDDPFSAVDAHTAAILFHDCVMSALREKTVILVTHQVEFLTEVDKILVMEGGCITQAGSHEELLTSGTTFEQLMNAHRDAITVLGTRHQNQEKCQVDRVNSEKRHHGCDPTNKNSNGEICETSFEGQQLTQEEQRETGAAGWKLFLDYVIISKGLFLLCLTLLALIGFAVVLTASSYWLAIASEIPSITSGMLVGVYTAMSLFSATFVYLRSLFVSHLGLKASKAFFSDFTSAIFNAPMSFFDSTPVGRILTRASSDLATLDFDLPFCTVFVAQTGVELLTGIVIMSSVTWQVLIVAILAAVAGYYIKGYYQASARELVRISGTTIAPVLNYTTETSAGVVTVRAFKMVDRFFQNFLHLVDTDTTLHLHTNAAMEWLLSRMEILLNLIFFTAASLFVFLPRGSIAPGLVGLSLSYAMSLSRSQMYFTKWSCILSNSIISVERIKQFMQIPQEPPKILEDKRPPSSWPSKGRIEFQDLKVRYRPNAPLVLNRITCTFKEGTRVGVVGRTGSGKTTLLSALFRLVEPSSGRILIDGLNICSIGLKDLRVKLSIIPQEPILFKGSVRTNLDPLDQYSDDEIWKVLEMCQLKESICGLPYLLDSSVSNEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQKIIRQEFSECTVITVAHRVPTVIDSDMVMVLSYGKLVEYDEPSKLMEDNGSSFSKLVAEYWSSCSRNSF* 1467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02028 1466 Gene3D ABC transporter type 1, transmembrane domain 274 584 IPR036640 GO:0005524|GO:0016020
Rops4g02028 1466 SUPERFAMILY ABC transporter transmembrane region 894 1203 IPR036640 GO:0005524|GO:0016020
Rops4g02028 1466 SMART AAA_5 629 802 IPR003593 GO:0016887
Rops4g02028 1466 SMART AAA_5 1247 1439 IPR003593 GO:0016887
Rops4g02028 1466 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 602 825 IPR003439 GO:0005524
Rops4g02028 1466 ProSitePatterns ABC transporters family signature. 727 741 IPR017871 GO:0005524|GO:0016887
Rops4g02028 1466 FunFam Multidrug resistance protein associated1 581 845 - -
Rops4g02028 1466 FunFam ABC transporter C family member 5 870 1202 - -
Rops4g02028 1466 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1211 1448 IPR027417 -
Rops4g02028 1466 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 290 568 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops4g02028 1466 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1221 1455 IPR003439 GO:0005524
Rops4g02028 1466 Gene3D - 597 830 IPR027417 -
Rops4g02028 1466 Pfam ABC transporter 620 754 IPR003439 GO:0005524
Rops4g02028 1466 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 825 IPR027417 -
Rops4g02028 1466 CDD ABC_6TM_ABCC_D1 288 576 IPR044746 GO:0140359
Rops4g02028 1466 FunFam ABC transporter C family member 3 1204 1456 - -
Rops4g02028 1466 FunFam ABC transporter C family member 10 270 584 - -
Rops4g02028 1466 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 209 1458 - -
Rops4g02028 1466 SUPERFAMILY ABC transporter transmembrane region 275 582 IPR036640 GO:0005524|GO:0016020
Rops4g02028 1466 Pfam ABC transporter transmembrane region 294 548 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops4g02028 1466 Pfam ABC transporter transmembrane region 932 1169 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops4g02028 1466 Gene3D - 1205 1456 IPR027417 -
Rops4g02028 1466 CDD ABCC_MRP_domain1 602 801 - -
Rops4g02028 1466 CDD ABCC_MRP_domain2 1219 1439 - -
Rops4g02028 1466 CDD ABC_6TM_ABCC_D2 915 1196 IPR044726 GO:0140359
Rops4g02028 1466 Pfam ABC transporter 1238 1386 IPR003439 GO:0005524
Rops4g02028 1466 Gene3D ABC transporter type 1, transmembrane domain 871 1202 IPR036640 GO:0005524|GO:0016020
Rops4g02028 1466 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 909 1171 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02028 Rops-Chr4 46484338 46490685 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02028 579 816 Calmodulin-binding Proteins AT2G36910 27.451 1.03e-21 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02028 - - cave:132187277 1902.1