Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02026 ATGTTTGCCAAGGCCCAAGTCATGAAAGCTTATGCATCATTTCTTTATTGGATGTCTCCTACTATTGTTCCTTCTGTTACTTTCGTTTGTTGTGCACTTTTCAGTAGTGCTCCATTGAATGCTGGAACCATTTTCACAGTTCTGGCAATGTTGAGGATGGTTGCAGAACCTGTTCGAATGATTATGGAGGCTCTATCTATTATGATCCAAGTTAAGGTCTCATTTGATCGTCTCAATACTTTTTTGCTTGATGAAGAGCTGAATAGTGATGATAATGGAAGCAACTTAAATCAATGTTCAGTTAATGTTGTGGAAATTCAAGCTGGCAACTTCATTTGGGATCACGAATCATTGTCCCCAACTATAAGAGATGTGAATTTAGAAATCAAATGGGGACAGAAAATTGCAGTTTATGGGCCAGTTGGTGCTGGAAAATCATCTCTTTTGTATGCAATACTTGGAGAGATTCCTAAAATTTCAGGAACTCATGTTAATATAGGTGGCACCCTGGCTTATGTTTCTCAAATTTCATGGATACAAAGTGGGAAAGTACGAGATAATATACTTTTTGGCAAGGCAATGGATGAAACAAGATATGAGAATGCCATTAAAGTTTGTGCCTTAGATAAGAATATTAATGATTTTAGCCATGGTGATCTTACAGAAATAGGTCAAAGAGGGATTAACATGAGTGGAGGACAAAAGCAAAAGATTCAACTAGCACGAGCAGTCTTCAATGATGCTTATATATATCTCCTTGATGATCCTTTCAGCGCAGTTGATGCACACACTGCTGCCACACTTTTCAATGACTGTGTCATCATGATGGCTCTAAGAGATAAAACAATCATTCTAGTGACTCGTCAAGTAGAGTTTCTTTATGAAGTTGATTCAATCCTGGTAATGGAGGGAGGAAAGGTTATCCAATCAGGCAATTATAAGGATCTCCTCACAGTTGGCACTACCTTTGAACAACTTTTGAGCGCCCATAAAGATGCATTAAAAGAACTGAATCACAATAATGAAGGTTTTGAAATTGAATCTCATAGTTTTTATCTCACTAAAAATCAAAGTGAGGGGGAGATTTCTACCAAGGGTCAACTTGGGGTACAACTTACACAAGAAGAAGAAAAAGAGATTGGTGATGCTGGTTGGAAACCATTCAGGGATTATATTTCTTTTTCCAGGGGATCATTCATGCTGTGTTGGATCACATTAGCACAATTTGTTTTTGTTGCTTTGCAGACTGCATCAACTTTTTGGCTTGCTTTAGCCATTGATATTCCAGAAGTAACTAGTGCCACCTTGATTGGAGTTTACTCCTTAATTTCATTTGTTAGTGCTGCTTTTGTATATCTAAGATCTCTCTTGGCTGCAAATCTTGGACTAAAAGCTTCTACAACCATCTTCTCAAGTTTCACTACAACTATCTAA 1434 0.3752 MFAKAQVMKAYASFLYWMSPTIVPSVTFVCCALFSSAPLNAGTIFTVLAMLRMVAEPVRMIMEALSIMIQVKVSFDRLNTFLLDEELNSDDNGSNLNQCSVNVVEIQAGNFIWDHESLSPTIRDVNLEIKWGQKIAVYGPVGAGKSSLLYAILGEIPKISGTHVNIGGTLAYVSQISWIQSGKVRDNILFGKAMDETRYENAIKVCALDKNINDFSHGDLTEIGQRGINMSGGQKQKIQLARAVFNDAYIYLLDDPFSAVDAHTAATLFNDCVIMMALRDKTIILVTRQVEFLYEVDSILVMEGGKVIQSGNYKDLLTVGTTFEQLLSAHKDALKELNHNNEGFEIESHSFYLTKNQSEGEISTKGQLGVQLTQEEEKEIGDAGWKPFRDYISFSRGSFMLCWITLAQFVFVALQTASTFWLALAIDIPEVTSATLIGVYSLISFVSAAFVYLRSLLAANLGLKASTTIFSSFTTTI* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02026 477 Gene3D ABC transporter type 1, transmembrane domain 1 90 IPR036640 GO:0005524|GO:0016020
Rops4g02026 477 ProSitePatterns ABC transporters family signature. 230 244 IPR017871 GO:0005524|GO:0016887
Rops4g02026 477 FunFam ABC transporter C family member 5 91 338 - -
Rops4g02026 477 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 106 329 IPR003439 GO:0005524
Rops4g02026 477 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 3 476 - -
Rops4g02026 477 Pfam ABC transporter 123 257 IPR003439 GO:0005524
Rops4g02026 477 CDD ABCC_MRP_domain1 104 306 - -
Rops4g02026 477 Coils Coil 327 347 - -
Rops4g02026 477 Gene3D ABC transporter type 1, transmembrane domain 371 477 IPR036640 GO:0005524|GO:0016020
Rops4g02026 477 Gene3D - 112 357 IPR027417 -
Rops4g02026 477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 104 328 IPR027417 -
Rops4g02026 477 SMART AAA_5 131 297 IPR003593 GO:0016887
Rops4g02026 477 SUPERFAMILY ABC transporter transmembrane region 8 84 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02026 Rops-Chr4 46430138 46431842 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02026 86 455 Calmodulin-binding Proteins AT2G36910 24.112 1.12e-16 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02026 - - gmx:100784827 711.835