Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02023 ATGGTGGACAGATTCTTCCAAACTTTCCTACATCTAGTTGACACAGATGCTACACTTCACTTGCATACTAATGCTGCTATGGAGTGGTTACTATCAAGAATGGAAATACTTCTAAATTTGATCTTTTTCACTGCAGCTTCTCTATTTGTGTTTCTTCCCAGGGGATCTATTGCTCCAGGGCTTGTGGGACTTTCTCTGTCTTATGCCATGTCATTATCAAAATCCCAGATGTATTTTACCAAGTGGTCTTGTATCCTATCAAATTCCATCATCTCTGTTGAACGAATAATGCAATTCATGCAGATACCACAAGAGCCTCCAAATATATTGGAGGATAAAAGGCCACCATCTTCATGGCCTTCCAAGGGCAGGATAGAGTTTCAACATTTGAAGGTTAGATATCGTCCAAATGCTCCGTTAGTTCTGAATCGAATCACTTGTACTTTCAAAGAAGAGACTAGAGTAGGAGTTGTAGGAAGGACTGGGAGCGGAAAAACAACACTTCTAAGTGCATTGTTTCATTTGGTAGAGCCTACAAGCGGTGAAATTCTTATAGACAGGCTTAACATATGCTCAATAGGCCTAAAGGATTTAAGAATGAAGCTAAGCATCATCCCTCAAGAACCAATTCTTTTCAAGGGCAGTGTTCGAACCAACTTGGATCCACTAGACCAATTCTCTGATGATGAGATATGGAAGGTTTTAGAGATGTGTCAACTCATGGAAGCTATATGTGGACTACCATATCTTTTGGACTCATCAGGCAAACTTGTGGAGTATGATGAGCCTTCAAAACTTATGGAGGACAATAGTTCTTCATTCTCCAAGCTTGTAGCTGAATACTGGTCCAGCTGCAGCAGGAACTTTTTCTAA 873 0.4032 MVDRFFQTFLHLVDTDATLHLHTNAAMEWLLSRMEILLNLIFFTAASLFVFLPRGSIAPGLVGLSLSYAMSLSKSQMYFTKWSCILSNSIISVERIMQFMQIPQEPPNILEDKRPPSSWPSKGRIEFQHLKVRYRPNAPLVLNRITCTFKEETRVGVVGRTGSGKTTLLSALFHLVEPTSGEILIDRLNICSIGLKDLRMKLSIIPQEPILFKGSVRTNLDPLDQFSDDEIWKVLEMCQLMEAICGLPYLLDSSGKLVEYDEPSKLMEDNSSSFSKLVAEYWSSCSRNFF* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02023 290 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 252 IPR027417 -
Rops4g02023 290 FunFam ATP binding cassette subfamily C member 11 110 242 - -
Rops4g02023 290 Gene3D - 108 256 IPR027417 -
Rops4g02023 290 Gene3D ABC transporter type 1, transmembrane domain 1 106 IPR036640 GO:0005524|GO:0016020
Rops4g02023 290 SUPERFAMILY ABC transporter transmembrane region 2 107 IPR036640 GO:0005524|GO:0016020
Rops4g02023 290 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 2 245 - -
Rops4g02023 290 Pfam ABC transporter 142 242 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02023 Rops-Chr4 46377023 46378870 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02023 122 248 Calmodulin-binding Proteins AT2G36910 26.923 1.90e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02023 - - cave:132187277 363.614