Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02022 ATGAGTCGAGAGCAGAAGAGGGGGAAGCAAGAGAAAGGTTCTGATGGTGCTGAGAAGGTTATTGTTGCTGTTAAGGCATCAAAGGAAATTCCAAAGACTGCTCTTGTTTGGTCACTGACTCATGTTGTTCAACCTGGAGATTGCATTACACTGTTAGTGGTTGTGCCTTCACAAAGTTCAGGCAGAAGATATTTTCCGAGATTTGCTGGTGACTGTGCCAATGGTATTAAGAAGTATCCTCCAGGAACAATTTCGGAGCAGAAGAGTGATATCACTGATTCATGCTCTCAGATGATCCTTCAGCTCCATGATGTCTATGATCCAAACAAGATAAATGTCAGGATTAAAATTGTTTCTGGATCACCTGGTGGAGCTGTGGCTGCAGAAGCCAAGAAAGCACAAGCCAATTGGGTTGTATTAGACAAACAGCTCAAACATGAGGAAAAGCGATGCATGGAGGAACTGCAATGTAACATTGTGGTTATGAAGCGTTCTCAACCAAAAGTGCTTCGCTTGAATTTGATTGGACCACAAAAGAAGGATGCTGAAGAAGCAAGTCCATCACATTCTGAGCAAGATGATATGCCTGAAAATCAAACCAAAGAGAAGCTTGATTCTTTAAATTCTATCAAAGGGCCAACTGTCACTCCAACTAGCAGCCCTGAGCTAGGGACACCATTCACTGCAACTGAAGCTGGTACTTCATCAGCTTCAAGCTCTGAACCAGGAACTTCACCATTCTTTATCTCAGAGATGAATGGTGAGTCAAAGAAAGAGGAAACCATCAAAGAAAATCAAGAAGATACTAATTCAGACACAGAAAGTGAAAATCTGTCCACATCCTCAGCAAGCATGAGATTCCAACCGTGGATCACAGAATTGCTTTTACATCAACAATCTTCTCAACGAAATGAAGAAAGATCAGAGACATATCATGGTATGCCTCAAGCATCTACAACAAGAGCTTTGCTAGAAAAGTTTTCTAGGCTTGATAGAGGAGCTGGACTTGAAATCTCATCCTATAGAAATGACTCGGATTTCAGTGGAAATTTAAGAGAAGCAATAGCATTATCCGGAAATGCCCCACCTGGTCCCCCTCCATTGTGTTCAATATGTCAACACAAGGCACCTGTCTTTGGAAAACCTCCAAGGTGGTTCAGCTATGCTGAGTTAGAACTCGCTACTGGTGGATTTTCTCAAGCCAACTTCTTGGCAGAAGGAGGGTTTGGATCTGTTCACAGGGGGGTTCTACCAGAAGGACAGGTCATTGCTGTCAAGCAACATAAATTGGCTAGTTCTCAAGGTGATCTTGAGTTTTGCTCGGAGGTGGAAGTCTTGAGCTGTGCTCAGCACCGAAATGTTGTTATGCTGATTGGATTCTGTATAGAGGATAAGAGAAGACTACTGGTCTATGAATACATATGCAATGGATCATTGGATTCACATTTATACGGTCGACAAAGGGAACCGTTAGAATGGTCTGCACGGCAAAAAATTGCTGTTGGAGCTGCTCGTGGGTTAAGGTATCTTCATGAAGAGTGCAGAGTGGGTTGTATTATCCACCGTGACATGAGGCCAAACAACATTCTCATAACTCATGATTTTGAACCTCTGGTTGGTGATTTTGGACTGGCAAGGTGGCAGCCTGATGGAGACACTGGTGTGGAAACTAGAGTGATTGGAACATTTGGGTATTTGGCTCCTGAATATGCTCAAAGTGGCCAAATCACTGAAAAAGCAGATGTTTATTCCTTTGGGGTGGTATTAGTGGAGCTTGTCACAGGGAGAAAAGCTGTGGATCTCACTAGACCTAAGGGACAGCAGTGCCTTACTGAATGGGCACGACCACTATTAGAAGAATATGCCATTCAGGAACTGATTGACCCGAGGTTGGGTGGCCACTATTCAGAACATGAGGTCTATTGCATGCTGCATGCTGCTTCATTATGCATACGGCGAGATCCTCATTCTAGACCACGCATGTCACAGGTTCTCCGGATACTTGAGGGTGACATGATGATGGACACAAATTACTTTTCTACTCCAAGCTATGATGTGGGAAACAGGAGTGGTAGACTTTGGTCAGAGCCACTACAGAGGCAGAGCCATTTCAGTGGTCCCCTCTTAGATGATTCACTGGAGTCATTCAGTGGGAAGATATCTCTTGATAAGTACAAGCCTACCTATTGGGATAGGGACAAGGCTAGGAGGGCTTCATGTGAAGATGATATTTAA 2235 0.4371 MSREQKRGKQEKGSDGAEKVIVAVKASKEIPKTALVWSLTHVVQPGDCITLLVVVPSQSSGRRYFPRFAGDCANGIKKYPPGTISEQKSDITDSCSQMILQLHDVYDPNKINVRIKIVSGSPGGAVAAEAKKAQANWVVLDKQLKHEEKRCMEELQCNIVVMKRSQPKVLRLNLIGPQKKDAEEASPSHSEQDDMPENQTKEKLDSLNSIKGPTVTPTSSPELGTPFTATEAGTSSASSSEPGTSPFFISEMNGESKKEETIKENQEDTNSDTESENLSTSSASMRFQPWITELLLHQQSSQRNEERSETYHGMPQASTTRALLEKFSRLDRGAGLEISSYRNDSDFSGNLREAIALSGNAPPGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSQANFLAEGGFGSVHRGVLPEGQVIAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQREPLEWSARQKIAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLTRPKGQQCLTEWARPLLEEYAIQELIDPRLGGHYSEHEVYCMLHAASLCIRRDPHSRPRMSQVLRILEGDMMMDTNYFSTPSYDVGNRSGRLWSEPLQRQSHFSGPLLDDSLESFSGKISLDKYKPTYWDRDKARRASCEDDI* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02022 744 ProSitePatterns Tyrosine protein kinases specific active-site signature. 519 531 IPR008266 GO:0004672|GO:0006468
Rops4g02022 744 MobiDBLite consensus disorder prediction 298 318 - -
Rops4g02022 744 PANTHER OS01G0750732 PROTEIN 160 676 - -
Rops4g02022 744 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 370 473 - -
Rops4g02022 744 MobiDBLite consensus disorder prediction 176 282 - -
Rops4g02022 744 Pfam Protein tyrosine and serine/threonine kinase 402 667 IPR001245 GO:0004672|GO:0006468
Rops4g02022 744 SUPERFAMILY Protein kinase-like (PK-like) 382 683 IPR011009 -
Rops4g02022 744 Gene3D Phosphorylase Kinase; domain 1 370 473 - -
Rops4g02022 744 MobiDBLite consensus disorder prediction 182 201 - -
Rops4g02022 744 CDD STKc_IRAK 404 670 - -
Rops4g02022 744 Gene3D Transferase(Phosphotransferase) domain 1 474 680 - -
Rops4g02022 744 ProSiteProfiles Protein kinase domain profile. 398 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g02022 744 MobiDBLite consensus disorder prediction 202 251 - -
Rops4g02022 744 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 474 677 - -
Rops4g02022 744 FunFam Dual-specific kinase DSK1-like 11 163 - -
Rops4g02022 744 MobiDBLite consensus disorder prediction 253 270 - -
Rops4g02022 744 Gene3D HUPs 17 168 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02022 Rops-Chr4 46346887 46352613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02022 339 664 Trihelix Transcription Factor Family AT1G68690 50.303 1.29e-101 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Rops4g02022 PK_Tyr_Ser-Thr 7.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02022 - - gmx:100816340 1378.62