Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02019 ATGGAGGAAACACCTAAGCTCCTCCATGGAACAATCGAAGCTACCATCTTCAAGGCCTCACCTTACTCACCTTGTTTACCTTTCAATTGCTTGTGGACAAATGGAAAGCCTGCTTATGTGACCATCAAGATAGACAACAAGAAGGTTGCAAAAACTAGCCAAGAAAATGATCGTGTATGGAACCAAACCTTTCAGATTCAATGTGCTCATCCAGCTGATTCAACTATCAGCATTACACTCAAATCATCAGGTTCCATATTGGGTAAATTCCATATCCAGGGCCAACAACTGTTGAAGGAAGGAAGTTTAATCAATGGCTTCTTCCCTCTCCTTATGGAAAATGGAAAACCAAACCCAAAACTTAAATTGAAGTTTATATTATGGTTCAAGCCAGCAGAATTGGAGCCAAGTTGGGCAAAGGTACTAAACAATGGGGAATTTCAAGGGCTAAGGGATGCTACATTCCCACAAAGGTCTAATTGTCAAGTCAAACTTTATCATGATGCTCATCATTCTCCTGCTTTTCAACCTTCCTTTGATCTATGTGGAACTCCAAAAAAGCTATGGGAAGATATCTATAAAGCCTTTGAGAATGCAAAGTATTTAGTCTATATTGCAGGATGGTCCTTAAATCCCAAGATGGTTCTGGTTAGAGGTCCTCATACAGATATCCCACATGCCAGAGGAATAAAGCTAGGTGAGCTATTGAAGAAAAAGGCAGAAGAAGGGGTGGCTGTGAGAGTAATGCTTTGGGATGATGAAAAATCTTTACCCTTTATTAAGAACAAAGGCATAATGAACACTCATGATGAGGATGCTTTTGCTTATTTCAACCACACAAAAGTAATATGCAAAAAGTGTCCTAGATTACGCCATAAGTTCCCCATATTGTTTGCTCACCATCAAAAGACCATAACAGTGGACACCAAAGCACCCAAATCTGTTAGTGACAGAGAACTTATGAGCTTTGTAGGTGGGTTAGATTTGTGTGATGGAAGATATGACACAGAGCAACATTCATTATTTCAAACACTCATTAGGGAATCTCATTGTTATGACTTCTACCAAACTAACATCGAAGGAGCTAGTCTCAACAAAGGAGGTCCAAGAGTGCCTTGGCATGATGCTCATGCTTGTGTTATTGGTGAGGCAGCTTGGGATGTGTTAACTAATTTTGAGCAAAGATGGACAAAGCAGTGTGACCCTTCTCTTCTAGTCCCTACTAGCACCTTGGTAAATCTTATGCCTAAGACAAGCTCAAGCACTGCTATAGAGAGGGATTGGAAAGTTCAAGTATACAGGTCAATTGACCATGTGTCAGTTGGTGACTTGTTTGGAAAGTTAAATGTGGAAAGTAGCATCCATGAAGCTTATGTTGAAGCAATCAGGCGTGCTGAAAGGTTTATATACATTGAGAACCAATATTTCATTGGGGGGTGCCATTTGTGGAAGAAAGATAAGCATTGTGGCTGCACAAATCTAATTCCCATTGAGATTGCACTCAAGGTGGTTAGTAAGATCAAAGCAAAAGAGAGGTTTGCAGTGTACATAGTTATACCAATGTGGCCAGAAGGAGTGCCTGAAGGTGAACATGTTCAAGATATACTACATTGGACAAGAGAAACAATGGCAATGATGTATAGGTTGATTGGAGAAGCAATGCAAGAAAGTGGAGAACCAGGGCACCCAAGAGACTACTTGAATTTTTTCTGCCTTGCAAATAGAGAGCAGAAGGGAAAAGGAGAGTATCTTCCACCAGATTGTCCCCATCCTGAAACACAATACTGGAATGCCCAAAAAAATAGGAGATTCATGGTTTATGTTCACTCCAATCTCATGATAGTGGATGATCTATACATATTAATAGGATCAGCTAATGTGAACCAAAGATCCATGGATGGGCAAAGGGACACTGAGATTGCCATAGGATGCTATCAATCTCAAGATGGAGGAAACCAAATGAACCTTGGTGATATTCATGCATTCAGAATGTCCTTATGGTTTGAGCACACTGTAAGTGTTGATGAATTGTTCTTAGAGCCAGAAAGTTTGGAATGTGTGCAGAGGATGCGTTCAATTGGAGATCAAATGTGGGAAATCTATAGTAGTGAAGAAATTGTGGACATGGAAGGTGTGCATCTTGTAACTTACCCTGTGAGAATAACACAACAAGGGTATGTGAAGGACCTGGCTAATGGAGTTCATTTTCCTGATACAAATTCTCTAGTGAAGGGGAAGAAGTCTAAAATGTTGCTCCCTGAATTTACTACTTAA 2274 0.4019 MEETPKLLHGTIEATIFKASPYSPCLPFNCLWTNGKPAYVTIKIDNKKVAKTSQENDRVWNQTFQIQCAHPADSTISITLKSSGSILGKFHIQGQQLLKEGSLINGFFPLLMENGKPNPKLKLKFILWFKPAELEPSWAKVLNNGEFQGLRDATFPQRSNCQVKLYHDAHHSPAFQPSFDLCGTPKKLWEDIYKAFENAKYLVYIAGWSLNPKMVLVRGPHTDIPHARGIKLGELLKKKAEEGVAVRVMLWDDEKSLPFIKNKGIMNTHDEDAFAYFNHTKVICKKCPRLRHKFPILFAHHQKTITVDTKAPKSVSDRELMSFVGGLDLCDGRYDTEQHSLFQTLIRESHCYDFYQTNIEGASLNKGGPRVPWHDAHACVIGEAAWDVLTNFEQRWTKQCDPSLLVPTSTLVNLMPKTSSSTAIERDWKVQVYRSIDHVSVGDLFGKLNVESSIHEAYVEAIRRAERFIYIENQYFIGGCHLWKKDKHCGCTNLIPIEIALKVVSKIKAKERFAVYIVIPMWPEGVPEGEHVQDILHWTRETMAMMYRLIGEAMQESGEPGHPRDYLNFFCLANREQKGKGEYLPPDCPHPETQYWNAQKNRRFMVYVHSNLMIVDDLYILIGSANVNQRSMDGQRDTEIAIGCYQSQDGGNQMNLGDIHAFRMSLWFEHTVSVDELFLEPESLECVQRMRSIGDQMWEIYSSEEIVDMEGVHLVTYPVRITQQGYVKDLANGVHFPDTNSLVKGKKSKMLLPEFTT* 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02019 757 Pfam Phospholipase D C terminal 675 747 IPR024632 -
Rops4g02019 757 SUPERFAMILY Phospholipase D/nuclease 145 406 - -
Rops4g02019 757 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 604 631 IPR001736 GO:0003824
Rops4g02019 757 Pfam C2 domain 38 110 IPR000008 -
Rops4g02019 757 Gene3D C2 domain 27 130 IPR035892 -
Rops4g02019 757 SMART pld_4 604 631 IPR001736 GO:0003824
Rops4g02019 757 SMART pld_4 296 333 IPR001736 GO:0003824
Rops4g02019 757 Gene3D Endonuclease Chain A 447 649 - -
Rops4g02019 757 Gene3D Endonuclease Chain A 175 429 - -
Rops4g02019 757 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 7 125 IPR035892 -
Rops4g02019 757 PANTHER PHOSPHOLIPASE D 8 739 IPR015679 -
Rops4g02019 757 Pfam Phospholipase D Active site motif 298 333 IPR001736 GO:0003824
Rops4g02019 757 PIRSF PLD_plant 4 757 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Rops4g02019 757 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 296 333 IPR001736 GO:0003824
Rops4g02019 757 SUPERFAMILY Phospholipase D/nuclease 427 686 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02019 Rops-Chr4 46321659 46324344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02019 30 757 Phospholipase D Gene Family (Wang group) AT1G55180 62.382 0.0 961
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02019 K01115 - gmx:100812642 1355.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02019 4 46321659 46324344 Rops4g02019 4 46321659 46324344 ECH
Rops7g00325 7 4188938 4191718 Rops4g02019 4 46321659 46324344 PCT