Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02010 ATGGAAAGGAGCATCCATGAAGCTTATGTTGAAGCAATTAGGCGTGCTGAAAGGTTTATATACATTGAGAAACAATATTTCATTGGGGGGTTCCATTTGTGGGAGAAAGATAGGCATTGTGATTTCACAAATCTAATCCCTATTAAGATTGCACTCAAGGTGGTTAGTAAGATCAAAGCAAAGGAAAGGTTTGCAGTGTACATAGTCATACCAACGTGGCCAGAAGGAGTGCCTGAAAGTGAACATCTTCAAGATATACTACATTGGACAAGAGAAACAAATACAATGATGTATAAGTTGATTGGAGAAGCAATACAAGAACGTGGAGAATCAGGGCACCCAAGAGACTACTTGAATTTTTTGTGCCTTGCAAATAGGGAGCAGAAGGGGAAAGGAGAGTATCTTCCACTAGATTCTCCTCATCCTGAAACACAATACTGGAATGTTTTAAAAAATAGGAGATTAATGGTTTATGTTCACTCCAATCTTATGATAGTGGATGATATATGCATATTGATAGGATCAGCTAATGTGAACCAAAGGTCAATGGATGTGAGTGATAAGAGTACCCATATAAGAACATAA 585 0.3778 MERSIHEAYVEAIRRAERFIYIEKQYFIGGFHLWEKDRHCDFTNLIPIKIALKVVSKIKAKERFAVYIVIPTWPEGVPESEHLQDILHWTRETNTMMYKLIGEAIQERGESGHPRDYLNFLCLANREQKGKGEYLPLDSPHPETQYWNVLKNRRLMVYVHSNLMIVDDICILIGSANVNQRSMDVSDKSTHIRT* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02010 194 SMART pld_4 155 182 IPR001736 GO:0003824
Rops4g02010 194 SUPERFAMILY Phospholipase D/nuclease 3 184 - -
Rops4g02010 194 PANTHER PHOSPHOLIPASE D 2 186 IPR015679 -
Rops4g02010 194 Gene3D Endonuclease Chain A 1 190 - -
Rops4g02010 194 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 155 182 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02010 Rops-Chr4 46192348 46193065 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02010 1 184 Phospholipase D Gene Family (Wang group) AT1G55180 66.310 7.25e-85 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02010 K01115 - gmx:100812642 323.939