Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02006 ATGAAAACTCGGTCTACCAAAGCTTGGTGCATGCATGGGAATCAAATTGTTGTCGGTGTAGGTGCTCTTCCTGGTTTAGTCCCTCTTCTCATTTGTGGACTTGTCAGTGTACCATTTGCAAAGATCCTACAAAATTGTCAATTACAGTTTATGATTACACAGGATGAGCGTCTTAGATCAACTTCAGAAATTCTAAATAGTATGAAAATCATTAAGTTACAGTCTTGGGAAGATAAATTCAAGAACTTAGTTAAGTCCCTACGCGCCAAAGAGTTCATATGGTTGTCTAAGGCACAACTCTCGAAAGCTTCTGGTTCATTTCTTTATTGGATGTCTCCTACCATCGTTTCTTGTGTTGTTTTCCTCGGATGTGCTCTTTTCAATAGTGCCCCATTGAAAGCTGAAACCATTTTCACAGTTCTTGCAACGTCGAGGATCATGGGAGAACCTGTTCGAATGATCCTAGAGGCTCTATCTATTATGATCCAAGTTCAGGTCTCCTTTGATCGTCTCAATAGCTTTTTGCTTGATGAAGAGCTTTACAGTGATGATAATGGAAGGAATATAAAGCAATGTTCAGTTAATGCTATAAAAATTCAAGCTGGCAACTTCATTTGGGATCAGGAATCCGGGTCCCCAACTATAAGAGATGTGAATTTAGAAATCAAATGGGGACAGAAAATTGCAGTTTGTGGGCCAGTTGGAGCTGGAAAATCATCTCTTTTGTATGCAATACTTAGAGAGATTCTTAAGATGTCAGTATCTGTTAATGTAGATGGCACCATAGCCTATGTTTCTCAAATTTCTTGGATACAAAGTGGGACAGTTCGAGATAATATACTCTTTGGCAAGCCCATGGATGAAACAAGATATGAGAATCCCATTAAATTTTGTGCCTTAGATAAGGATATTAATGATTTTAGCCATGGTGATCTTACAGAAATAGATCAGAGGGGGATTAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTCAAGCAGTTTACAATGATGCTGACATCTATCTCCTTGATGACCCTTTCAGTGCAGTTGATGCACACACTGCTGCTGTTCTGTTTAATGAGTGTGTTATGACTGCTCTAAGAGAGAAAACAGTCATTCTAGTGACTCACCAAGTGAAGTTCCTCTCAGAAGTTGACACAATCTTGGTAATGGAGGGAGGAAAAGTTATTCAATCAGGTAGCTATGAGAATCTCCTTACAGCTGGGACAGCCTTTGAACAACTTGTGAGTGCCCATAAAGATGCAATTACAGGGTTGGATCAAGATAATGAAATAAAGGAGGTTCTGAAAATGAGAATGGATTCAAAGAAGTTACTTCGCGATGCATTCGGACACGAGCACAAGGTGCTGCTCACTCGTGAAGCTGTTCAACGTCATGTTAAAGAACAGAAAAAGAAAGATGTGTGGGACAACACAAGGGAGAGATTAAAAAATAAGAAAGCGGGAGAGGAGGAGCAGAACGAGGAAATACAAGACGCAGAGGAGGAGAATGAGGTAATACAAGATGCAGAAGAAGAGAATGAGGAGAAGAGCAGCGAGAAAAAGAAGAAGAAGAAGAAGTAG 1590 0.3994 MKTRSTKAWCMHGNQIVVGVGALPGLVPLLICGLVSVPFAKILQNCQLQFMITQDERLRSTSEILNSMKIIKLQSWEDKFKNLVKSLRAKEFIWLSKAQLSKASGSFLYWMSPTIVSCVVFLGCALFNSAPLKAETIFTVLATSRIMGEPVRMILEALSIMIQVQVSFDRLNSFLLDEELYSDDNGRNIKQCSVNAIKIQAGNFIWDQESGSPTIRDVNLEIKWGQKIAVCGPVGAGKSSLLYAILREILKMSVSVNVDGTIAYVSQISWIQSGTVRDNILFGKPMDETRYENPIKFCALDKDINDFSHGDLTEIDQRGINMSGGQKQRIQLAQAVYNDADIYLLDDPFSAVDAHTAAVLFNECVMTALREKTVILVTHQVKFLSEVDTILVMEGGKVIQSGSYENLLTAGTAFEQLVSAHKDAITGLDQDNEIKEVLKMRMDSKKLLRDAFGHEHKVLLTREAVQRHVKEQKKKDVWDNTRERLKNKKAGEEEQNEEIQDAEEENEVIQDAEEENEEKSSEKKKKKKK* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02006 529 MobiDBLite consensus disorder prediction 496 515 - -
Rops4g02006 529 SUPERFAMILY ABC transporter transmembrane region 22 177 IPR036640 GO:0005524|GO:0016020
Rops4g02006 529 Gene3D - 173 444 IPR027417 -
Rops4g02006 529 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 22 163 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops4g02006 529 ProSitePatterns ABC transporters family signature. 322 336 IPR017871 GO:0005524|GO:0016887
Rops4g02006 529 Gene3D ABC transporter type 1, transmembrane domain 16 172 IPR036640 GO:0005524|GO:0016020
Rops4g02006 529 MobiDBLite consensus disorder prediction 470 495 - -
Rops4g02006 529 CDD ABCC_MRP_domain1 197 397 - -
Rops4g02006 529 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 199 420 IPR003439 GO:0005524
Rops4g02006 529 SMART AAA_5 224 397 IPR003593 GO:0016887
Rops4g02006 529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 419 IPR027417 -
Rops4g02006 529 MobiDBLite consensus disorder prediction 470 529 - -
Rops4g02006 529 Pfam ABC transporter 216 349 IPR003439 GO:0005524
Rops4g02006 529 FunFam Multidrug resistance protein associated1 176 439 - -
Rops4g02006 529 Pfam ABC transporter transmembrane region 22 147 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops4g02006 529 Coils Coil 475 529 - -
Rops4g02006 529 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 16 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02006 Rops-Chr4 46147350 46152919 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02006 213 426 Calmodulin-binding Proteins AT2G36910 27.426 7.86e-19 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02006 - - gmx:100784827 685.641