Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02004 ATGGAGCCTCATATCTTTGATTTTGGTCTTGCAAAGCTTTTGGTTGATGAAGAGGCCCATGTTACAATAGTTGTTGCTGGGTTTTGGCTATTTGGCACCAGGAGAGCTACTAATAAGTCAGATGTATATAGCTTTGGGGTTCTATTGTTGGAACTTGTTATTGGAAAGAGACCCACAGATCCTACCTTTGCAAAGAGAGGTTTGAATGTTGTTGGCTGGATGAACACATTACTGAGAGAAAACAGATTAGAATATGTGGTTGAAAAAAGATGCATTGATGCAGATACAGGAACACTTGAAGTAATTATTGAGCTAGCAGCAAGATGCACATATGGAAATGCAGATGATCGTCCATCAATGAACCAGGTGTTACAGCTGCTGGAACAAAAGGAGCAACATGAAAAGGGTGGTGGTGATGGAGGACCATGTTCCACTCTCTTTATTGCAAATCTCGGTCCAAACTGCACTGAGGAAGAACTGAAGCATGTGTATACTGGATTCAACATGGTCAAAATACGTTCTAGAGGAGGAATGCCTGTTGCATTTGCTGATTTTGAGGAAATTGATCAAGCTGCTAAGGTCATGGAGGAGCTTCTGGGAAGCTTACTTCCATCATCTGATCGGGGTGGCATGCACATAGAATATGCAAGGTCTAAAATGAGGAAGCATTAG 672 0.4182 MEPHIFDFGLAKLLVDEEAHVTIVVAGFWLFGTRRATNKSDVYSFGVLLLELVIGKRPTDPTFAKRGLNVVGWMNTLLRENRLEYVVEKRCIDADTGTLEVIIELAARCTYGNADDRPSMNQVLQLLEQKEQHEKGGGDGGPCSTLFIANLGPNCTEEELKHVYTGFNMVKIRSRGGMPVAFADFEEIDQAAKVMEELLGSLLPSSDRGGMHIEYARSKMRKH* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02004 223 ProSiteProfiles Protein kinase domain profile. 1 136 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g02004 223 Gene3D - 139 223 IPR012677 -
Rops4g02004 223 Gene3D Transferase(Phosphotransferase) domain 1 1 138 - -
Rops4g02004 223 Pfam Protein tyrosine and serine/threonine kinase 5 127 IPR001245 GO:0004672|GO:0006468
Rops4g02004 223 SUPERFAMILY Protein kinase-like (PK-like) 2 131 IPR011009 -
Rops4g02004 223 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 133 - -
Rops4g02004 223 SUPERFAMILY RNA-binding domain, RBD 133 220 IPR035979 GO:0003676
Rops4g02004 223 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 144 218 IPR000504 GO:0003723
Rops4g02004 223 SMART rrm1_1 145 214 IPR000504 GO:0003723
Rops4g02004 223 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 146 203 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02004 Rops-Chr4 46135792 46141023 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02004 1 130 Receptor kinase-like Gene Family AT2G35620 44.853 1.92e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Rops4g02004 PK_Tyr_Ser-Thr 1.4e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02004 - - gmx:100803920 210.69