Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01999 ATGGCTTCTTCCTCTGTCGCTCCTCTCAAAAAATATGAAGTTTTCATCAGCTTTAGGGGCGAGGACACTCGCCATAACTTCACAAGCCATCTTCACGCTGCTTTGTGCAGAAGCCATGTGGAAACCTACATAGACTACAGGATCGAGAAAGGAGATGTGGTATGGCCAGAACTTGAGAGAGCCATCAAAGACTCCTCTCTCTTTTTGGTTGTCTTCTCTGAAAACTATGCGGATTCAACGTGGTGTTTGAATGAACTGGTTGAAATAATGGAATGCCACAAGAAGAATGGACAAGTAGTTATTCCTGTGTTCTACCAAACAGACCCTTCGAACGTGCGGAAGCAGACAGGGAGTTACCAAGCAGCGTTTGAAAAACACAAGAAGGGCAACCACAGCGAGGAGGAGATGCAAAAGTGGAAGGGTGCTCTCAAAGATGCAGCCAATATATCAGGCTTCCATTGTAGTTCATCCAGGACTGAATCTGACTTAATTGAAGACATCATCAAAGATGTTTCACGAAAACTAAATCACATGTATAAAAATGAACTTGGATGTCTGTTCATTCCCGACGGAAACTGTTCATGCATTGAAGCTTCAATAAAAATTGATCCGAAAAATGTGCGAATCATTGGAATTTGGGGCATGGGAGGCATAGGCAAGACAACTCTTGCTGCTGCTATTTTTCATAATGTCTCTTCCGAATATGACGGTAGTTGCTTCTTAGAAAAAGTGACCGAAGAATCAGAAAGGCATGGAACCAATTACATATGTAATAGACTGCTTACTAAGTTATTAAGGAAAAATCCTGACATTGACACTACCAAAGTAATACCCTCTGATGTCAAGATACGACTCAAACGTATGAAAGTTTTCGTTGTGTTAGATGATGTCAAAACTTCAGAACTTCTGGAGAACTTGGTTGTAGTAGGACATGATTGGCTAGGAGCTGGTAGCAGAGTTATTGTGACAACCAGAGATAAGAATGTGCTTAATGAAAGAGTTGATGAAATATATGAAGTCAAAGAAATGAATTCGGAAAACTCCCTTCGACTCTTTAGCTTGAATGCCTTTAACAAAATAAATCCTAAAGAGGGATATGAGGAGATTTCAAATGAAGCAATTGCTTATGCCAAAGGCATCCCTTTAGCTTTAAAAGTTTTGGGATCATTTCTTCGTTCCAAATGTAAAAATGAATGGGACAGTGCATTGACTAAATTGAAGAAGATTCCCAATCAAAAAATTCAGAAGGTGCTGAGATTGAGCTATGATGAATTAGATGATACAGAGAAAAATATATTTCTAGACATTGCATTTGTCTTTAGAGGGTTCACAAGAAACAGAGTAACAAAAATATTAGATGCTTGTGGTTTCTTTGCAGAAACAGGGTTAAGAAACCTTTTAGACAAGACCCTTATAACTACTACTTCAAATAATTGCATAGAAATGCATGACTTGATGCAAGAGATGGGTAGGGAAATTGTTCGTGAAGAATCTCCTAAAAATCCTGGACAACGCAGCAGATTGTGTGAACCTGAGGAAATCTGTGATGTACTAACAAATAATAGAGGAACTGATGCAATTGAAGTCATATGTCTAGACATGTCTCAAATCAAACGTATAGATCCGAGCCACAAAGCATTCAAAAACATGACAAATCTAAGGATACTTTCTTTCCAGGCCCACAATTGGGACAATACGATAATTAAATCTATGAACTTGTCGATGGGTCTTGAATTATTCTCCAAGAACTTGAGGTATTTTGGGTGGAAGTCATATCCATTAAAGTCTCTGCCATCAACTTTAGGTCTAGAGAAGCTTGTTGAGCTTTCCCTGCTATACAGCAAAGTGGAAAAACTTTGGAGCGGAGTACAGAATCTGCCGAGTTTAGAGAGAATTGACCTTAGTTGGTCGAGAGGCTTGATCGAGTGTCCAAATTTGTCTGGTGCCCCAAATCTTCAACATGTATCACTCTCCATGTGTGAAAGCTTGTCTCAAGTTGATCCATCTATTTTAACTCTCCCAAAGCTTGAGGTATTAAATGTGTCAAACTGCAAGTCGCTCAAGAGTCTCTGCAGCGCCACCTCTTCACCAAATTTGCGACGACTTGTGGCCAATGGTTGCTCTAATATCCAAGAACATTGGAACGGAGTACTGAATCTGCCAAGTTTAGAGAGAATTGACCTTAGTTGGTCGAGAGGCTTGATCGAGTGTCCAAATTTGTCTGGTGCCCCAAATCTTCAATGTGTATCACTCATGGGGTGTGAAAGCTTGTCTCAAGTTGATCCATCTATTTTAACTCTCCCAAAGCTTTATGAATTAAGTGTGTCTCACTGCAAGTCGCTCAAGAGTCTCTGCAGCGCCACCTGTTCACCACATTTGCGACTACTTGATGCCTGGGGTAGCTCTAATATCCAAGAATTGACATTAATGTCCCCCAGTACCAATGGTCATTCTACAACTGATTTGTATTTTGAAAGGCCAGGTTTGAATAGTGAGCTTCCTTCATCAACTTTGCATATAGGAAATCTTGAACGTTTTACTTTTCCCATCAGTGAGTGTCTTACGGATCTACCTGAAAATTTTGCCTCTGAAATCCAACTTTCTGACTCAAGGAAAGATGGACTTGATAATTCAATCACCTTAAGTAAAGTACTATCTAGCTCTTGCTTCCGATATGTAAGACGTTTGATTTTTTTCCAATGTCTCACTATATTTGAACTCCCAGACAACATCTCCAAGTTATCATCCTTAGAGCATTTACAACTATCATGTTGTGTTGTCATAAGCTTACCTGAAAGCATTAAGAATCTTCCACGACTCAAAGATCTTATAGTCGAGCACTGTCAAATGCTTCGATCTATACCTGCGCTTCCACAATCCATTCAGTCTTTCCAAGTATGGGATTGCAAATCTCTTCAGAATGTGTTAACTTCAACGAGTGAACCACCCAAAAAACACAACAACTGTATTTTTCTGCTTCATAACTGCATAAATTTGGATCGAAATTCATTCAATGCCATTTTGAAAGATGCCATTATTAGGATTGAACTTGGAGCCAAACTAATGTCTGTAGAAGCATTAGAAAACACAGAAGATGCATCCTGCGATGACGATGATTATGTTGTTGAGATTTGCTGCATGTTACCATCTGGAAACTGCAAAGTTGGAGACTTGTTTCATTACCACTCTACTCAAGCTTCTGTCACCATTGAACTTCCCCGTAATCATTTGGGTTTCGTTGCCTACATCGTTCTTTTTAAAGATCAATCATTCGATGGAACGTTGGGATGTGAATGCAGCTTGGAATCTAATTGGGGTGAAAGGATCACCATAAATGGATTCTTTTATGATGACTGTGGTTCATATCGGTTGGAGTCAGATCATGTGTTTTTATGGTATGATGCGTATTTTTACACGAAGATAATGGAAGCAATCGAAAAAATAAAAGCCAATGATAGGTGCACAACTCAAAATCCAAAGCTTACATTGAAATTTTTTGCTCGAACTGAAGAAAACAAGGAAGCATCGATAAAAGAGTGTGGATTTCGCTGGATATATCCCTCAAAAGAACAAATTGTCGAGGAGAAAGATCATAGATATGCATCCAAGAGATGTAGGGAAACTCTCAGAGTCGAGGGCTCTGAATCTGATGAGCAAGAAGAAACAATTCTTCCAACAAAGAAATTAAAGCAACGTGTCTTTGGAACTCCCTCCAATCTGGAAGTCGAAGAAATGGAAGACTTGAGGCGTTTGCTTGAAGAACTGCATATTTGA 3774 0.3937 MASSSVAPLKKYEVFISFRGEDTRHNFTSHLHAALCRSHVETYIDYRIEKGDVVWPELERAIKDSSLFLVVFSENYADSTWCLNELVEIMECHKKNGQVVIPVFYQTDPSNVRKQTGSYQAAFEKHKKGNHSEEEMQKWKGALKDAANISGFHCSSSRTESDLIEDIIKDVSRKLNHMYKNELGCLFIPDGNCSCIEASIKIDPKNVRIIGIWGMGGIGKTTLAAAIFHNVSSEYDGSCFLEKVTEESERHGTNYICNRLLTKLLRKNPDIDTTKVIPSDVKIRLKRMKVFVVLDDVKTSELLENLVVVGHDWLGAGSRVIVTTRDKNVLNERVDEIYEVKEMNSENSLRLFSLNAFNKINPKEGYEEISNEAIAYAKGIPLALKVLGSFLRSKCKNEWDSALTKLKKIPNQKIQKVLRLSYDELDDTEKNIFLDIAFVFRGFTRNRVTKILDACGFFAETGLRNLLDKTLITTTSNNCIEMHDLMQEMGREIVREESPKNPGQRSRLCEPEEICDVLTNNRGTDAIEVICLDMSQIKRIDPSHKAFKNMTNLRILSFQAHNWDNTIIKSMNLSMGLELFSKNLRYFGWKSYPLKSLPSTLGLEKLVELSLLYSKVEKLWSGVQNLPSLERIDLSWSRGLIECPNLSGAPNLQHVSLSMCESLSQVDPSILTLPKLEVLNVSNCKSLKSLCSATSSPNLRRLVANGCSNIQEHWNGVLNLPSLERIDLSWSRGLIECPNLSGAPNLQCVSLMGCESLSQVDPSILTLPKLYELSVSHCKSLKSLCSATCSPHLRLLDAWGSSNIQELTLMSPSTNGHSTTDLYFERPGLNSELPSSTLHIGNLERFTFPISECLTDLPENFASEIQLSDSRKDGLDNSITLSKVLSSSCFRYVRRLIFFQCLTIFELPDNISKLSSLEHLQLSCCVVISLPESIKNLPRLKDLIVEHCQMLRSIPALPQSIQSFQVWDCKSLQNVLTSTSEPPKKHNNCIFLLHNCINLDRNSFNAILKDAIIRIELGAKLMSVEALENTEDASCDDDDYVVEICCMLPSGNCKVGDLFHYHSTQASVTIELPRNHLGFVAYIVLFKDQSFDGTLGCECSLESNWGERITINGFFYDDCGSYRLESDHVFLWYDAYFYTKIMEAIEKIKANDRCTTQNPKLTLKFFARTEENKEASIKECGFRWIYPSKEQIVEEKDHRYASKRCRETLRVEGSESDEQEETILPTKKLKQRVFGTPSNLEVEEMEDLRRLLEELHI* 1258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01999 1257 SMART till_3 11 149 IPR000157 GO:0007165
Rops4g01999 1257 Pfam Leucine Rich Repeat 605 624 IPR011713 -
Rops4g01999 1257 Gene3D - 342 426 IPR042197 -
Rops4g01999 1257 Pfam TIR domain 11 181 IPR000157 GO:0007165
Rops4g01999 1257 PRINTS Disease resistance protein signature 284 298 - -
Rops4g01999 1257 PRINTS Disease resistance protein signature 377 391 - -
Rops4g01999 1257 PRINTS Disease resistance protein signature 209 224 - -
Rops4g01999 1257 PRINTS Disease resistance protein signature 671 687 - -
Rops4g01999 1257 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 712 IPR044974 GO:0006952
Rops4g01999 1257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 436 IPR027417 -
Rops4g01999 1257 Gene3D Ribonuclease Inhibitor 518 693 IPR032675 -
Rops4g01999 1257 Gene3D Ribonuclease Inhibitor 694 813 IPR032675 -
Rops4g01999 1257 SUPERFAMILY L domain-like 482 978 - -
Rops4g01999 1257 Gene3D Ribonuclease Inhibitor 814 1007 IPR032675 -
Rops4g01999 1257 Pfam NB-ARC domain 207 425 IPR002182 GO:0043531
Rops4g01999 1257 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 152 IPR035897 -
Rops4g01999 1257 FunFam Disease resistance protein (TIR-NBS-LRR class) 344 426 - -
Rops4g01999 1257 Gene3D - 193 338 IPR027417 -
Rops4g01999 1257 ProSiteProfiles TIR domain profile. 10 175 IPR000157 GO:0007165
Rops4g01999 1257 FunFam Disease resistance protein (TIR-NBS-LRR class) 9 177 - -
Rops4g01999 1257 Gene3D - 9 182 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01999 Rops-Chr4 46056360 46062794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01999 719 920 WRKY Transcription Factor Family AT4G12020 30.198 3.36e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01999 - - mtr:25502326 1100.5