Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01990 ATGGCTTCTTCCTCTGTCGCTCCTCTCAAAAAATATGAAGTTTTCATCAGCTTCAGGGGCGAGGACACTCGCGCCAACTTCACAAGCCATCTTCACGCTGCTCTACGTAGAAGCCATGTGGAAACCTACATAGACTACAGGATTGAGAAAGGAGACGAGGTTTGGCCTGAACTTGAGGGAGCCATCAAAAACTCCTCTCTCTTTGTGGTTGTGTTCTCAGAAAACTATGCGGATTCAACGTGGTGTTTGAATGAACTGGTTGAAATTATGGAGTGCAAGAAACATGGACAAGATGTTATTCCCGTGTTCTACCACATAGATCCTTCGCACGTGCGGAAGCAGAAAGGGAGTTACCAGACAGCGTTTGAAGAACACGAGAAGCGCAACTACAGCGAGGAGAAGATGCAAAAGTGGAAGGATGCTCTGTCTAATGCAGCCAATATATCTGGCTTCCATTCTGGTTCATACAGGACTGAACATGACTTGATTGAAGACATCATCAAAGTGGTATTACAAAAACTAAATCACAAATGCAAAAGCGAACTTAGATGTCTGTTCATATCAAATGAAAATTATTCACGTATTGAAACTTTGGTAAAGATTGATTCGAAAAATGTTGGAATCATTGGAATTTGGGGCATGGCAGGCATAGGCAAGACAAGCCTTGCTGTTGCTATCTTTCAAGAGGTCTCTTCCCAATATGAGGGTAGTTGCTTCCTAGAAAATGTGACAGAAGAATCAAAAAGGCATGGAACCAATTACATGTGCAACAAACTTCTTTATAAGTTACTAAGGGAAGATCCTGGCATTGACACTGCCAAAGTAATACCCTCTGCTGTCCAGAGAAGACTCAAACGTATGAAAGTTTTTGTTGTACTAGATGATGTTAAAACTTCAGAACTTCTAGAGAACTTGGTTGGGGTAGGACGTGACTGGCTAGGAGCTGGTAGCAAAGTCATTGTGACCACCAGAGATAAGCATGTACTTGAAAGTGGAGGAGTTGAAGAAATTCATGAAGTCAAGCAAATGAACTTGGAAAACTCCCTTCAACTTTTCAGTTTGAATGCCTTTAAGAAAACATATCCTAAAGAGGGATATGAGGAGTTATCAAACAAAGCAATTGTTTATACCAAAGGTGTCCCTTTAGCTTTAAAAGTTTTGGGATCATTTCTTTGTTCCAAAAGTAAAGTAGAATGGGATAGTGCATTAGCTAAATTGAAGAAGATTCCCAACCCAAAAATTCAGAAGGTGCTGAGATTGAGCTATGATGAATTAGATGGCACTGAGAAAAATATATTTCTAGATATTGCATTTTTTTTCAGAAGCTGTAAAGCATACAGAGTAACGAAGATATCAAATGCATGTGGTTTCTTTGCAGATATAGGGATAAGAAACCTTTTAGACAAGGCTCTTATAACTATTGATTTGGAAAATCACATACAAATGCATGACTTGATACAAGAGATGGGTAGGGAAATTGTTCGGGAAGAATCTCCTGAAAATCCTGGACGACGCAGCAGATTGTCGGATCCTGAGGAAGTTTGTCACGGAACTGATGCAGTTGAAGGCATATTTTTGGACTTGACTCAAGTTACAGACATAAATCTAAGCTCCAAAGCTTTCAAAAAAATGTCAAATCTAAGACTACTTGCTTTCCAAGGCATCAATCGGGACTTTAAAATAATTAATTCTACCAACCTGGAGACAGGTCTTGAATTATCGGCTAAGAACTTAAGATATTTTCTGTGGGAAGGATATCCGTCAAAGTCTCTACCATCAACTTTTTGTCCCGAGAAGCTTGTTGAGCTTTCCCTGCCATATAGCAATGTGGAGAAACTTTGGAGCGGAGTACAGAGCCTCTGCAGTGGCACTTATTCACCATTTTTAGGAAAAGTTTTTGCCATGGAGTGCTCCAATGTCCAAGAGTTCACATTAATGCCTGCCAATACCAGTGGTCCTTCCACTTCCACAACTGGTTTGTGTTTAGAACGTTCAGGTTTGAAGAATGAGTTGTCGTCATCAACTTTACATATTGGAAATCTTCAATTCTTTTCTTTTCCCATAAGTGAAGTGCTTATGAATCTTCCTGAAAATTTTGCCGATGAAATCGCACTTTCTGACTCAGGAAAAAATAAACGTCATACTTTCATTACCTTAAAGAAAATACTAGGTAGCTCTTTCATCCGATATGTAAAACATCTATCTTTTTTGCTGTGTGCCACTTTATCTAAAATCCCAGAAAACATCTCCTTGTTATCATCGTTAGAGTATTTAACATTATCGTGTAGTGCTGTTGTAAGCTTGCCTGAAAGCATTGAGTATCTACCACAACTCAAATTTCTTGAAGTTGTTGAATGTGAATTGCTTCAATCTATACCTACTCTCCCACAATCCATTCAAGGCTTCTTTGCTTGGAACTGCAAATCTCTTCGGAATGTGTTAACTTCAAAGAGTGAACCATCCAAAAAACCCAACAACTATAGTTTGATGCTTCTTGACTGTGTAAATTTGGATCAACATTCATACGATGCCATTTTGAAAGATGCCATTGTTAGGATTGAACGTGGACCAAAAACACTATCAGCAGAAGAATTAGAAAACAATGAAGAAGATGCTTCCTCGGATTTTTGTTATTGTTTTAACAATTTATATCTTTTTTTATGTGTTTATAACATGGTAAGTAGTGGTCAGATTTGTTATTTGTTACCAGCTAGAAACCGCAAAGTTAGAGAGTGGTTCCATTATCACTCTACACAAGCCTCAATCACCATTGAACTTCCATCAAATCACTTGGGTTTCATTTTCTTCTTGGTTCTTTCTCAAGCTCAATTACTTCAAATGGGAGACTCTGGAAGTCTTGGATGTGAATGCCACTTGAAAACTGAAGGGGATGAAAATCATGTGTTTTTATGGTATGATGCACAATGTTGTGTGGAGATCAGGGAAGCAATCAAATTAATAAAAGACAATGACTGGTGCACCACTCACAATCCAAAGCTTACATTTAGATTCTTCGCTCGAAATCAGTATGAGGAAGCAGCGATAAAAGAGTGTGGATTTCGCTGGATATATTCCTCGAAAGATCAAATTATCGAGGAAGAAGAAGGATGTGCATCCAAGAGATGTAGGGAAACTCTCATAGTTGAGGACTCTGAATCTGATAAGCAAGAAGAAATTGTTCCTCCGTCAAAGAAATTAAAGCAATGTGTCTTTGGAACTCCTTCCAAGCTGGAAGCTGAAGAAATTGAAGACTTGAGGTGTTTACTTGAAGAACTGCATATTTGA 3285 0.3869 MASSSVAPLKKYEVFISFRGEDTRANFTSHLHAALRRSHVETYIDYRIEKGDEVWPELEGAIKNSSLFVVVFSENYADSTWCLNELVEIMECKKHGQDVIPVFYHIDPSHVRKQKGSYQTAFEEHEKRNYSEEKMQKWKDALSNAANISGFHSGSYRTEHDLIEDIIKVVLQKLNHKCKSELRCLFISNENYSRIETLVKIDSKNVGIIGIWGMAGIGKTSLAVAIFQEVSSQYEGSCFLENVTEESKRHGTNYMCNKLLYKLLREDPGIDTAKVIPSAVQRRLKRMKVFVVLDDVKTSELLENLVGVGRDWLGAGSKVIVTTRDKHVLESGGVEEIHEVKQMNLENSLQLFSLNAFKKTYPKEGYEELSNKAIVYTKGVPLALKVLGSFLCSKSKVEWDSALAKLKKIPNPKIQKVLRLSYDELDGTEKNIFLDIAFFFRSCKAYRVTKISNACGFFADIGIRNLLDKALITIDLENHIQMHDLIQEMGREIVREESPENPGRRSRLSDPEEVCHGTDAVEGIFLDLTQVTDINLSSKAFKKMSNLRLLAFQGINRDFKIINSTNLETGLELSAKNLRYFLWEGYPSKSLPSTFCPEKLVELSLPYSNVEKLWSGVQSLCSGTYSPFLGKVFAMECSNVQEFTLMPANTSGPSTSTTGLCLERSGLKNELSSSTLHIGNLQFFSFPISEVLMNLPENFADEIALSDSGKNKRHTFITLKKILGSSFIRYVKHLSFLLCATLSKIPENISLLSSLEYLTLSCSAVVSLPESIEYLPQLKFLEVVECELLQSIPTLPQSIQGFFAWNCKSLRNVLTSKSEPSKKPNNYSLMLLDCVNLDQHSYDAILKDAIVRIERGPKTLSAEELENNEEDASSDFCYCFNNLYLFLCVYNMVSSGQICYLLPARNRKVREWFHYHSTQASITIELPSNHLGFIFFLVLSQAQLLQMGDSGSLGCECHLKTEGDENHVFLWYDAQCCVEIREAIKLIKDNDWCTTHNPKLTFRFFARNQYEEAAIKECGFRWIYSSKDQIIEEEEGCASKRCRETLIVEDSESDKQEEIVPPSKKLKQCVFGTPSKLEAEEIEDLRCLLEELHI* 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01990 1094 Pfam TIR domain 11 180 IPR000157 GO:0007165
Rops4g01990 1094 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 151 IPR035897 -
Rops4g01990 1094 SUPERFAMILY "Winged helix" DNA-binding domain 413 498 IPR036390 -
Rops4g01990 1094 FunFam Disease resistance protein (TIR-NBS-LRR class) 344 426 - -
Rops4g01990 1094 Gene3D - 178 337 IPR027417 -
Rops4g01990 1094 Gene3D Ribonuclease Inhibitor 518 934 IPR032675 -
Rops4g01990 1094 Pfam C-JID domain 908 1027 IPR045344 -
Rops4g01990 1094 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 436 IPR027417 -
Rops4g01990 1094 SMART till_3 11 148 IPR000157 GO:0007165
Rops4g01990 1094 Gene3D - 343 426 IPR042197 -
Rops4g01990 1094 SUPERFAMILY L domain-like 525 895 - -
Rops4g01990 1094 Gene3D - 9 177 IPR035897 -
Rops4g01990 1094 PRINTS Disease resistance protein signature 208 223 - -
Rops4g01990 1094 PRINTS Disease resistance protein signature 283 297 - -
Rops4g01990 1094 PRINTS Disease resistance protein signature 377 391 - -
Rops4g01990 1094 PRINTS Disease resistance protein signature 773 789 - -
Rops4g01990 1094 FunFam Disease resistance protein (TIR-NBS-LRR class) 9 176 - -
Rops4g01990 1094 Pfam NB-ARC domain 196 423 IPR002182 GO:0043531
Rops4g01990 1094 Pfam Leucine Rich Repeat 599 618 IPR011713 -
Rops4g01990 1094 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 825 IPR044974 GO:0006952
Rops4g01990 1094 ProSiteProfiles TIR domain profile. 10 174 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01990 Rops-Chr4 45731598 45743287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01990 10 798 WRKY Transcription Factor Family AT4G12020 28.944 1.79e-84 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01990 - - gmx:100783388 1211.05