Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01984 ATGATGGCTTCTTCCTCTGTCGCTCCTCTCAAAAAATATGAAGTTTTCATCAGCTTCAGGGGCGAGGACACTCGCGCCAACTTCACAAGCCATCTTCACGCTGCTCTACGTAGAAGCCATGTGGAAACCTACATAGACTACAGGATTGAGAAAGGAGACGAGGTTTGGCCTGAACTTGAGGGAGCCATCAAAAACTCCTCTCTCTTTCTGGTTGTGTTCTCAGAAAACTATGCGGATTCAACGTGGTGTTTGAATGAACTGGTTGAAATTATGGAGTGCAAGAAACATGGACAAGATGTTATTCCCGTGTTCTACCACATAGATCCTTCGCACGTGCGGAAGCAGAAAGGGAGTTACCAGACAGCGTTTGAAGAACACGAGAAGCGCAACTACAGCGAGGAGAAGATGCAAAAGTGGAAGGATGCTCTGTCTAATGCAGCCAATATATCTGGCTTCCATTCTGGTTCATACAGGACTGAACATGACTTGATTGAAGACATCATCAAAGTGGTATTACAAAAACTAAATCACAAATGCAAAAACGAACTTAGATGTCTGTTCATATCAAATGAAAATTATTCACGTATTGAAACTTTGGTAAAGATTGATTCGAAAAATGTTGGAATCATTGGAATTTGGGGCATGGCAGGCATAGGCAAGACAAGCCTTGCTGTTGCTATCTTTCAAGAGGTCTCTTCCCAATATGAGGGTAGTTGCTTCCTAGAAAATGTGACAGAAGAATCAAAAAGGCATGGAACCAATTACATGTGCAACAAACTTCTTTATAAGTTACTAAGGGAAGATCCTGGCATTGACACTGCCAAAGTAATACCCTCTGCTGTCCAGAGAAGACTCAAACGTATGAAAGTTTTTGTTGTACTAGATGATGTTAAAACTTCAGAACTTCTAGAGAACTTGGTTGGGGTAGGACGTGACTGGCTAGGAGCTGGTAGCAAAGTCATTGTGACCACCAGAGATAAGCATGTACTTGAAAGTGGAGGAGTTGAAGAAATTCATGAAGTCAAGCAAATGAACTTGGAAAACTCCCTTCAACTTTTCAGTTTGAATGCCTTTAAGAAAACATATCCTAAAGAGGGATATGAGGAGTTATCAAACAAAGCAATTGTTTATACCAAAGGTGTCCCTTTAGCTTTAAAAGTTTTGGGATCATTTCTTTGTTCCAAAAGTAAAGTAGAATGGGATAGTGCATTAGCTAAATTGAAGAAGATTCCCAACCCAAAAATTCAGAAGGTGCTGAGATTGAGCTATGATGAATTAGATGGCACTGAGAAAAATATATTTCTAGATATTGCATTTTTTTTCAGAAGCTGTAAAGCATACAGAGTAACGAAGATATCAAATGCATGTGGTTTCTTTGCAGATATAGGGATAAGAAACCTTTTAGACAAGGCTCTTATAACTATTGATTTGGAAAATCACATACAAATGCATGACTTGATACAAGAGATGGGTAGGGAAATTGTTCGGGAAGAATCTCCTGAAAATCCTGGACGACGCAGCAGATTGTCGGATCCTGAGGAAGTTTGTGACGTATTGACAAATAATACAGGAACTGATGCAGTTGAAGGCATATTTTTGGACTTGACTCAAGTTACAGACATTAATCTAAGCTCCAAAGCTTTCAAAAAAATGTCAAATCTAAGACTACTTGCTTTCCAAGGCATCAATCGGGACTTTAAAATAATTAATTCTACCAACCTGGAGACAGGTCTTGAATTATCGGCTAAGAACTTAAGATATTTTCTGTGGGAAGGATATCCGTCAAAGTCTCTACCATCAACTTTTTGTCCCGAGAAGCTTGTTGAGCTTTCCCTGCCATATAGCAATGTGGAGAAACTTTGGAGCGGAGTACAGAATCTGCCGAGTTTAGAAAGAATTGACCTGAGTGTGTCCAAACACTTGATAGAGTGTCCAAATTTGTTTGGTGCCCCAAAACTTAAAGAAGTAGATCTAAGTTGGTGTGATAGCTTGCCTCAAGTTGATCCATCTATTTACACTCTCCCGAAGCTTGAAGTATTAAGTGTGAATGGATGCATGTCACTTAAGAGCCTCTGCAGTGGCACTTATTCACCATTTTTAGGAAAAGTTTTTGCCATGGAGTGCTCCAATGTCCAAGAGTTCACATTAATGCCTGCCAATACCAGTGGTCCTTCCACTTCCACAACTGGTTTGTGTTTAGAACGTTCAGGTTTGAAGAATGAGTTGTCGTCATCAACTTTACATATTGGAAATCTTCAATTCTTTTCTTTTCCCATAAGTGAAGTGCTTATGAATCTTCCTGAAAATTTTGCCGATGAAATCGCACTTTCTGACTCAGGAAAAAATAAACGTCATACTTTCATCACCTTAAAGAAAATACTAGGTAGCTCTTTCTTCCGATATGTAAAACATCTATCTTTTTTGTTGTGTGCCACTTTATCTAAAATCCCAGAAAACATCTCCTTGTTATCATCGTTAGAGTATTTAACATTATCGTGTAGTGCTGTTGTAAGCTTGCCTGAAAGCATTGAGTATCTACCACAACTCAAATTTCTTGAAGTTGTTGAATGTGAATTGCTTCAATCTATACCTACTCTCCCACAATCCATTCAAGGCTTCTTTGCTTGGAACTGCAAATCTCTTCGGAATGTGTTAACTTCAAAGAGTGAACCATCCAAAAAACCCAACAACTATAGTTTGATGCTTCTTGACTGTGTAAATTTGGATCAACATTCATACGATGCCATTTTGAAAGATGCCATTGTTAGGATTGAACGTGGACCAAAAACACTATCAGCAGAAGAATTAGAAAACAATGAAGAAGATGCTTCCTCGGATTTTTGTTATTGTTTTAACAATTTATATCTTTTTTTTTGTGTTTATAACATGGTAAGTAGTGGTCAGATTTGTTATTTGTTACCAGCTAGAAACCGCAAAGTTAGAGAGTGGTTCCATTATCACTCTACACAAGCTTCAATCACCATTGAACTTCCATCAAATCACTTGGGTTTCATTTTCTTCTTGGTTCTTTCTCAAGCTCAATTACTTCAAATGGGAGACTCTGGAAGTCTTGGATGTGAATGCCACTTGAAAACTGAAGGGGATGAAAGTATCAATATAAGTAGTTACCTTGTATACAGGGCGAAGATTCATACTTCATCCAAAATCAAGTCAGATCATGTGTTTTTATGGTATGATGCACAATGTTGTGTGGAGATCAGGGAAGCAATCAAATTTATAAAAGACAATGACTGGTGCACCACTCACAATCCAAAGCTTACATTTAGATTCTTCGCTCGAAATCAGTATGAGGAAGCAGCGATAAAAGAGTGTGGATTTCGCTGGATATATTCCTCGAAAGATCAAATTATCGAGGAAGAAGAAGGATGTGCATCCAAGAGATGTAGGGAAACTCTCATAGTTGAGGACTCTGAATCTGATAACCAAGAAGAAATTGTTCCTCCGTCAAAGAAATTAAAATGTGTCTTTGGAACTCCTTCCAAACTGGAAGCTGAAGAAATTGAAGACTTGAGGTGTTTACTTGAAGAACTGCATATTTGA 3561 0.3847 MMASSSVAPLKKYEVFISFRGEDTRANFTSHLHAALRRSHVETYIDYRIEKGDEVWPELEGAIKNSSLFLVVFSENYADSTWCLNELVEIMECKKHGQDVIPVFYHIDPSHVRKQKGSYQTAFEEHEKRNYSEEKMQKWKDALSNAANISGFHSGSYRTEHDLIEDIIKVVLQKLNHKCKNELRCLFISNENYSRIETLVKIDSKNVGIIGIWGMAGIGKTSLAVAIFQEVSSQYEGSCFLENVTEESKRHGTNYMCNKLLYKLLREDPGIDTAKVIPSAVQRRLKRMKVFVVLDDVKTSELLENLVGVGRDWLGAGSKVIVTTRDKHVLESGGVEEIHEVKQMNLENSLQLFSLNAFKKTYPKEGYEELSNKAIVYTKGVPLALKVLGSFLCSKSKVEWDSALAKLKKIPNPKIQKVLRLSYDELDGTEKNIFLDIAFFFRSCKAYRVTKISNACGFFADIGIRNLLDKALITIDLENHIQMHDLIQEMGREIVREESPENPGRRSRLSDPEEVCDVLTNNTGTDAVEGIFLDLTQVTDINLSSKAFKKMSNLRLLAFQGINRDFKIINSTNLETGLELSAKNLRYFLWEGYPSKSLPSTFCPEKLVELSLPYSNVEKLWSGVQNLPSLERIDLSVSKHLIECPNLFGAPKLKEVDLSWCDSLPQVDPSIYTLPKLEVLSVNGCMSLKSLCSGTYSPFLGKVFAMECSNVQEFTLMPANTSGPSTSTTGLCLERSGLKNELSSSTLHIGNLQFFSFPISEVLMNLPENFADEIALSDSGKNKRHTFITLKKILGSSFFRYVKHLSFLLCATLSKIPENISLLSSLEYLTLSCSAVVSLPESIEYLPQLKFLEVVECELLQSIPTLPQSIQGFFAWNCKSLRNVLTSKSEPSKKPNNYSLMLLDCVNLDQHSYDAILKDAIVRIERGPKTLSAEELENNEEDASSDFCYCFNNLYLFFCVYNMVSSGQICYLLPARNRKVREWFHYHSTQASITIELPSNHLGFIFFLVLSQAQLLQMGDSGSLGCECHLKTEGDESINISSYLVYRAKIHTSSKIKSDHVFLWYDAQCCVEIREAIKFIKDNDWCTTHNPKLTFRFFARNQYEEAAIKECGFRWIYSSKDQIIEEEEGCASKRCRETLIVEDSESDNQEEIVPPSKKLKCVFGTPSKLEAEEIEDLRCLLEELHI* 1187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01984 1186 Gene3D - 178 338 IPR027417 -
Rops4g01984 1186 PRINTS Disease resistance protein signature 625 641 - -
Rops4g01984 1186 PRINTS Disease resistance protein signature 209 224 - -
Rops4g01984 1186 PRINTS Disease resistance protein signature 284 298 - -
Rops4g01984 1186 PRINTS Disease resistance protein signature 378 392 - -
Rops4g01984 1186 Pfam TIR domain 12 181 IPR000157 GO:0007165
Rops4g01984 1186 Pfam C-JID domain 979 1120 IPR045344 -
Rops4g01984 1186 SMART till_3 12 149 IPR000157 GO:0007165
Rops4g01984 1186 SUPERFAMILY L domain-like 482 907 - -
Rops4g01984 1186 Gene3D - 344 427 IPR042197 -
Rops4g01984 1186 Gene3D Ribonuclease Inhibitor 518 700 IPR032675 -
Rops4g01984 1186 Gene3D Ribonuclease Inhibitor 703 908 IPR032675 -
Rops4g01984 1186 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 437 IPR027417 -
Rops4g01984 1186 FunFam Disease resistance protein (TIR-NBS-LRR class) 10 177 - -
Rops4g01984 1186 Pfam NB-ARC domain 197 424 IPR002182 GO:0043531
Rops4g01984 1186 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 152 IPR035897 -
Rops4g01984 1186 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 893 IPR044974 GO:0006952
Rops4g01984 1186 Gene3D - 10 177 IPR035897 -
Rops4g01984 1186 FunFam Disease resistance protein (TIR-NBS-LRR class) 345 427 - -
Rops4g01984 1186 Pfam Leucine Rich Repeat 606 625 IPR011713 -
Rops4g01984 1186 ProSiteProfiles TIR domain profile. 11 175 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01984 Rops-Chr4 45673192 45678822 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01984 11 869 WRKY Transcription Factor Family AT4G12020 30.161 2.51e-93 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01984 - - mtr:25502326 1362.82