Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01983 ATGGCTTCTTCCTCTGTCGCTCCTCTCAAAAAATATGAAGTTTTCATCAGCTTTAGGGGGGAGGACACTCGCCATAACTTCACAAGCCATCTTCACGCTGCTCTACGCAGAAGCCATGTGGAAACCTACATAGACTACAGGATCGAGAAAGGAGATGTGGTATGGCCAGAACTTGAGAGAGCCATCAAAGACTCCTCTCTCTTTTTGGTTGTGTTCTCTGAAAACTATGCGGATTCAACGTGGTGTTTGAATGAACTGGTTGAAATAATGGAATGCCACAAGAAGAATGGAGAACATGTTATTCCAGTGTTCTACCAAACAGACCCTTCGAACGTGCGGAAGCAGACAGGGAGTTACCAAGCAGCGTTTGAAAAACACAAGAAGGGCAACCACAGCGAGGAGGAGATGCAAACGTGGAAGGGTGCTCTCAAAGATGCAGCCAATATATCTGGCTTCCATTGTAGTCCATCCAGGACTGAATCTGACTTAATTGAAGACATCATCAAAGATGTTTCACGAAAACTAAATCACATGTATAAAAATGAACTTGGATGTCTGTTCATTCCCGACGGAAACTGTTCATGCATTGAAGCTTCAATAAAAATTGATCCGAAAAATGTGCGAATCATTGGAATTTGGGGCATGGGAGGCATAGGCAAGACAACTCTTGCTGCTGCTATTTTTCATAATGTCTCTTCCGAATATGAAGGTAGTTGCTTCTTAGAAAAAGTGACCGAAGAATCAGAAAGGCATGGAACCAATTACATATGTAATAGACTTCTTACTAAGTTATTAAGGAAAAATCCTGACATTGACACTACCAAAGTAATACCCTCTGATGTCAAGATACGACTCAAACGTATGAAAGTTTTCGTTGTGTTAGATGATGTCAAAACTTCAGAACTTCTGGAGAACTTGGTTGTAGTAGGACATGATTGGCTAGGAGCTGGTAGCAGAGTTATTGTGACAACCAGAGATAAGAATGTGCTTAATGAAAGAGTTGATGAAATATATGAAGTCAAAGAAATGAATTCGGAAAACTCCCTTCGACTCTTTAGCTTGAATGCCTTTAACAAAATAAATCCTAAAGAGGGATATGAGGAGATTTCAAATGAAGCAATTGCTTATGCCAAAGGCATCCCTTTAGCTTTAAAAGTTTTGGGATCATTTCTTCGTTCCAAATGTAAAAATGAATGGGACAGTGCATTGACTAAATTGAAGAAGATTCCCAATCAAAAAATTCAGAAGGTGCTGAGATTGAGCTATGATGAATTGGATGATACAGAGAAAAATATATTTCTAGACATTGCATTTGTCTTTAGAGGGTTCACAAGAAACAGAGTAACAAAAATATTAGATGCTTGTGGTTTCTTTGCAGAAACAGGGTTAAGAAACCTTTTAGATCAGACCCTTATAACTACTACATCAAATAATTGCATAGAAATGCATGACTTGATGCAAGAGATGGGTAGGGAAATTGTTCGTGAAGAATCTCCTAAAAATCCTGGACAACGCAGCAGATTGTGTGAACCTGAGGAAATCTGTGATGTACTAACAAATAATAGAGGAACTGATGCAATTGAAGTCATATGTCTAGACATGTCTCAAATCAAACGTATAGATCCGAGCCACAAAGCATTCAAAAACATGACAAATCTAAGGATACTTTCTTTCCAGGCCCACAATTGGGACAATACGATAATTAAATCTATGAACTTGTCGATGGGTCTTGAATTATTCTCCAAGAACTTGAGGTATTTTGGGTGGGAGTCATATCCATTAAAGTCTCTGCCATCAACTTTAGGTCTAGAGAAGCTTGTTGAGCTTTCCCTGCTATACAGCAAAGTGGAAAAACTTTGGAGCGGAGTACAGAATCTGTCGAGTTTAGAGAGCATTGACCTTAGGTGGTCGAAAAGCTTGAAAGAGTGTCCAAATTTGTCTGGTGCCCCAAATCTTCAATGTGTATCACTCATGGGGTGTCAAAGCTTGTCTCAAGTTGATCCATCTATTTTAACTCTCCCAAAGCTTGAGGTATTAAATGTGTCAAACTGCACGTCGCTCAAGAGTCTCTGCAGCGCCACCTCTTCACCAAATTTGCGACGACTTGTGGCCAATGATTGCTCTAATATCCAAGAACATTGGAACGGAGTACTGAATCTGCCAAGTTTAAAGAGAATTGACCTTGCTTGGTCGAAAAGCTTGATAGAGTGTCCAAATTTGTCTGGTGCCCCAAATCTTCGAAGCGTAATATTCACAGGGTGTGAAAGCTTGTCTCAAGTTGATCCATCTATTTTAACTCTCCCAAAGCTTTATGAATTAAGTGTGTCTTACTGCAAGTCGCTCAAGAGTCTCTGCAGCGCCACCTGTTCACCACATTTGCGACTACTTAATGCCTGGGGTTGCTCTAATATCCAAGAATTGACATTAATGCCCCCCAGTACCAATGGTCATTCTACAACTGATTTGTATTTTGAAAGGTCAGGTTTGAATAGTGAGCTTCCTTCATCAACTTTGCATATAGGAAATCTTGAACTTTTTACTTTTTCCATCAGTGAGTGTCTTACGGCTCTACCTGAAAATTTTGCCTCTGAAATCAAACTTTCTGACACAAGGAAAGATGGACTTGATAGTTCAATCACCTTAAGTAAAGTACTATCTAGCTCTTGCTTCCGATATGTAAGACGTTTGATTTTTTGGGAATGTCTCACTATATTTGAACTCCCAGACAACATCTCCGAGTTATCATTGTTAGAGCATTTACAACTAGGATTTAGTGCTGTCATAAGCTTACCTGAAAGCATTAAGAATCTTCCACGACTCGAAGATCTTATAGTCATGAAATGTCAAATGCTTCGATCTATACCTGCGCTTCCACAATCCATTCAGTCTTTCGAAGTTTGGGATTGCAAATCTCTTCAGAATGTGTTAACTTCAACGAGTGAACCACCCAAAAAACACAACGACTGTATTTTTCTGCTTCATAACTGCATAAATTTGGATCGAAATTCATTCAATGCCATTTGGAAAGATGCCATTGGTAGGATTGAACTTGGAGCCAAACTAATGTCTGTAGAAGAATTAGAAAACACAGAAGATGCATCCTGCGATGACGATGATGATGTTAAGATTTGCTACATGTTACCATCTGGAAACTGCAAAGTTGGAGACTTGTTTCATTACCACTCTACTCAAGCTTCTGTCACCATTGAACTTCCCCGTAATCATTTGGGTTTCTTTGCCTACATGGTTCTTTTTAAAGATCAATCATTCGATGGAATGTTGGGATGTGAATGCGGCTTGGAATCTAATTGGGGTGAAAGGATCACCATAAAAGGATTCTATGATGACTGTGGTTTAGATTACTTGGAGTCAGATCATGTGTTTTTATGGTATGATGCATATTTTTACACGAAGATAATGGAAGCAATCGAAAAAATAAAAGCCAATGATAGGTGCACAACTCAAAATCCAAAGCTTACATTGAAATTTTTTGCTCTAGCTGAAAAAAACGAGGAAGCATCGATAAAAGAGTGTGGATTTCGCTGGATATATCCCTCAAAAGATCAAATTGTCGAGGAGAAAGAAGAAAGATATGCATCCAAGAGATGTAGGGAAACTCTCAGAGTCGAGGGCTCTGAATCTGATGAGCAAGAAGAAACGATTCTTCCAACAAAGAAATTAAAGCAACGTGTCTTTGGAACTCCCTCCAATCTGGAAGCCGAAGAAATGGAAGACTGA 3738 0.393 MASSSVAPLKKYEVFISFRGEDTRHNFTSHLHAALRRSHVETYIDYRIEKGDVVWPELERAIKDSSLFLVVFSENYADSTWCLNELVEIMECHKKNGEHVIPVFYQTDPSNVRKQTGSYQAAFEKHKKGNHSEEEMQTWKGALKDAANISGFHCSPSRTESDLIEDIIKDVSRKLNHMYKNELGCLFIPDGNCSCIEASIKIDPKNVRIIGIWGMGGIGKTTLAAAIFHNVSSEYEGSCFLEKVTEESERHGTNYICNRLLTKLLRKNPDIDTTKVIPSDVKIRLKRMKVFVVLDDVKTSELLENLVVVGHDWLGAGSRVIVTTRDKNVLNERVDEIYEVKEMNSENSLRLFSLNAFNKINPKEGYEEISNEAIAYAKGIPLALKVLGSFLRSKCKNEWDSALTKLKKIPNQKIQKVLRLSYDELDDTEKNIFLDIAFVFRGFTRNRVTKILDACGFFAETGLRNLLDQTLITTTSNNCIEMHDLMQEMGREIVREESPKNPGQRSRLCEPEEICDVLTNNRGTDAIEVICLDMSQIKRIDPSHKAFKNMTNLRILSFQAHNWDNTIIKSMNLSMGLELFSKNLRYFGWESYPLKSLPSTLGLEKLVELSLLYSKVEKLWSGVQNLSSLESIDLRWSKSLKECPNLSGAPNLQCVSLMGCQSLSQVDPSILTLPKLEVLNVSNCTSLKSLCSATSSPNLRRLVANDCSNIQEHWNGVLNLPSLKRIDLAWSKSLIECPNLSGAPNLRSVIFTGCESLSQVDPSILTLPKLYELSVSYCKSLKSLCSATCSPHLRLLNAWGCSNIQELTLMPPSTNGHSTTDLYFERSGLNSELPSSTLHIGNLELFTFSISECLTALPENFASEIKLSDTRKDGLDSSITLSKVLSSSCFRYVRRLIFWECLTIFELPDNISELSLLEHLQLGFSAVISLPESIKNLPRLEDLIVMKCQMLRSIPALPQSIQSFEVWDCKSLQNVLTSTSEPPKKHNDCIFLLHNCINLDRNSFNAIWKDAIGRIELGAKLMSVEELENTEDASCDDDDDVKICYMLPSGNCKVGDLFHYHSTQASVTIELPRNHLGFFAYMVLFKDQSFDGMLGCECGLESNWGERITIKGFYDDCGLDYLESDHVFLWYDAYFYTKIMEAIEKIKANDRCTTQNPKLTLKFFALAEKNEEASIKECGFRWIYPSKDQIVEEKEERYASKRCRETLRVEGSESDEQEETILPTKKLKQRVFGTPSNLEAEEMED* 1246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01983 1245 SUPERFAMILY L domain-like 482 857 - -
Rops4g01983 1245 ProSiteProfiles TIR domain profile. 10 175 IPR000157 GO:0007165
Rops4g01983 1245 SUPERFAMILY L domain-like 883 974 - -
Rops4g01983 1245 PRINTS Disease resistance protein signature 671 687 - -
Rops4g01983 1245 PRINTS Disease resistance protein signature 377 391 - -
Rops4g01983 1245 PRINTS Disease resistance protein signature 284 298 - -
Rops4g01983 1245 PRINTS Disease resistance protein signature 209 224 - -
Rops4g01983 1245 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 712 IPR044974 GO:0006952
Rops4g01983 1245 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 152 IPR035897 -
Rops4g01983 1245 Pfam Leucine Rich Repeat 605 624 IPR011713 -
Rops4g01983 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 436 IPR027417 -
Rops4g01983 1245 Gene3D - 9 182 IPR035897 -
Rops4g01983 1245 Gene3D - 193 338 IPR027417 -
Rops4g01983 1245 FunFam Disease resistance protein (TIR-NBS-LRR class) 9 177 - -
Rops4g01983 1245 Pfam NB-ARC domain 207 425 IPR002182 GO:0043531
Rops4g01983 1245 Gene3D - 342 426 IPR042197 -
Rops4g01983 1245 Gene3D Ribonuclease Inhibitor 509 692 IPR032675 -
Rops4g01983 1245 Gene3D Ribonuclease Inhibitor 693 817 IPR032675 -
Rops4g01983 1245 Gene3D Ribonuclease Inhibitor 818 989 IPR032675 -
Rops4g01983 1245 Pfam TIR domain 11 181 IPR000157 GO:0007165
Rops4g01983 1245 FunFam Disease resistance protein (TIR-NBS-LRR class) 344 426 - -
Rops4g01983 1245 SMART till_3 11 149 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01983 Rops-Chr4 45659378 45665889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01983 719 920 WRKY Transcription Factor Family AT4G12020 30.693 8.92e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01983 - - gmx:100805490 1067.37