Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01979 ATGCCAAACATAAGGTTATTTGCTTTCAAAGGCCCCAATCAGGACTTTGAGAGATTTAATCCCGTTTATCTTCCAAAGGGACTTGAATTCTTGCCTAAGAACTTGAGGTATTTTGGGTGGGATGGATATCCATTAAAGTCTCTACCATTAACTTTTTGTCCTGAGAAGCTTGTCAAGCTTTTCCTACCGCACAACAATGTGGAAAAACTTTGGAATGGAGTACAGAATTTGCCGAGTTTAGTGAGTATCGACCTTAGTGAGTCCCCACACTTGATAGAGTGTCCAAATTTGTCCGGTGCCCCAAATCTTAAACATGTAATACTCACCGGCTGTGAAAGCATGCCTCTTGTTGATCCATCTATTTTCACTCTCCAGAAGCTTGTAGAATTAGACGTGAGAGAATGCAAGTCACTTAAGAGCCTTTGTAGCATCACTTGTTCACCATCTTTACGAAGATTTTATACCTGGGGTTGCTCCAATCTCCAAGACTTCACATCAATACTCCCTAGCACCAGTGGTCCTTCTACATCTGGTTCGTATTTGGAAGGGTCGGGTTTGAAGAATGAGCTGCCTTCATCCATTTTTCATATAAGAAATCTTGAAATATTTTCTTCTCCCATCAGTGAGAGTCTTATGGATCTTCCTGAAAACTTTGCCTATCAAATCACACTTTCTGACTCCATGAAAAATGAACATGATACTTTGATCATCTTAAGTAAAATACTACCTAGCTCTTGCTTCCGGTATGTAAAACATCTATTTTTTGTATTGTGTCACACTTTATCTGAACTCCCAGACAGCATCTCCTTGTTATCATCATTAGAGTATTTAGAACTATCATTTTGTGCTGTCATAAGCTTACCTGAAAGCATCAAGTATCTTCCACGACTCAAATTTCTTGAAGTTGTGGAATGTAAAATGCTTCAATCTATACCCGCGCTTCCACAATCTATTCAGGGCTTCTTGGTTCGGAACTGTGAATCTATTCAGAATGTGTTAACTTCAATTAGTGAACCATCCAACAATTCCAACGGTTGTACTTTACTGCTTCCTAATTGCATAAAATTGGATCGACATTCATATCTTGCCATTTTGAAAGATGCCATTGTTAGGATTGAACTTGGAGCAAAACCACTGTCAACGGAAGTATTAGAAGACAAAGAGGATGCATCCTCAGATGATGACGACGACGACGACGACGACGATGATTATCATGACATGTATATTTCTAAAGCAGTAAGAAGTGGTAAGATTTGCTACTTGTTACCGGCTGAAAACTTTAGAGATTGGTTCCATTATCGCTCTACACAAGCTTTGGTTACCATTGAACTTCCCCCTAAGTGTTTGGGTTTCGTTTTCTACTTGGTTCTTTCTCAATTTCAATTATTCTACATGGGATCCCATGGAAATTTTGGATGTGAATGCTATTGGGAAACTAGCTGGCGTGAAAAGATCAATATAAGTTTCTTTATAGATGAAAGTGACTTGCCTAATCCTTGGACTATTTTTGACATTAAGTCAGATCATGTGCTTTTCTGGTATGATGAACAAGGTTGCAAGCAGATAAAGGATGCAATCAAAGAAATGAAAGTCAATGACAAGTGCACCAAATATCCAAAGCTCACATTTAAATTCTTCGCTCGAACTCAAAATAATGAGGAAGTAGCTATAGAAGAGTGTGGATTTCGGTGGATATATTCCTCAGAAGATCAAATTGTGGAGGAAGGAGAAGGATGTGAATCGGAGAGATGTAGGGAAACTCAAAAAGTTGAGGGCTCTGAATATGATGAACAAGAAGAAACGGTCCTTCCAACAGTGGAATTCATGCAAAGTGTCTTTGGAACTCAGTCCAACATGGAAGCAGAAGAAATAAAAGACTCGAGGCTTTCACTTGAAGAACTCCTGCACATTGGATTTGGTAGAGACCTCATGCCAAATACAGAGGCGAATGCTTCCAACTATGATTGCAGCCTTTTTCTTCTTCTGCGTTTCTGTACAGGTAGCTGCAAAATTAACCAGATGGCTTCTTCCTCTCTCGCTCCTCTCAAAAAGTATGAGGTTTTCATCAGCTTTAGAGGTGAGGACACTCGCGCCAACTTCACCAGCCATCTTCATGCTGCTTTGTGCAGAAGCCATGTGGAAACCTACATAGACTACAGGATCGACAAAGGAGACGAGGTTTGGCCTGAACTTGAGGCAGCCATCAAAGACTCCTCTCTCTTTCTGGTGGTCTTCTCAGAAAACTATGCGGATTCAACGTGGTGTTTGAATGAACTGGTTGAAATTATGGAGTGCAAAAAGAATGATGGACATGAGGTTATTCCAGTGTTCTACCAAACAGAACCATCGCACGTGCGGAAGCAGACAGGGAGTTACCAAAAGGCGTTTGGAAAACACAAGAAGCAGGGCAAAGAGAAGATCCGAAAGTGGAAGGATGCTCTGTATGATGCATCCAATATATCTGGCTTCGATTCTAGTTCCTACAGGACTGAATTTGACTTGATTGAAGACATCATCAAAGTGGTTTTACAGAAACTGAACCACAAGTACAAAAACGAATTTAGATGCCTGTTCATACCTGATGAAAACTATTCGGGCATTGAATCTTTAGTGAAAATTGATTCAGAAGATGTTCGAATAATTGGAATTTGGGGCATGGGAGGCATTGGTAAGACAACTCTTGCTGCTGCTATTTTTCATAAGTTCTCTTCCCAATACGAAGATAGTTGCTTCTTAGAAAATGTGACAGAAGAATCAAACAGGCATGGAACCAATTACATATGCAACAGGCTTCTTTCTAAGTTACTTAGGGAAGATCTTGGTATTGACACAGCCAAAGTAATACCCGCGGCTGTCATGAGAAGACTAAGACGTATGAAAGCTTTCATTGTACTAGATGATGTGAAAACTTTAGAACTTCTAGAAAACATGGTTGGAGTAGGACGTGACTGGCTAGGTGCTGGTAGCAAAGTCATTGTGACCACCAGAGATAAACATGTGCTTGTAAGTGGAGGAGTTGACGAAATTCATGAAGTCAAGCAAATGAACTTTCAAAACTCACTCCGACTCTTCAGCTTGAATGCCTTTAAAAAAACATATCCTGAAAAGGGATATGAGGAGGTATCAAACAAAGCAATTGCTTATGCCAATGGCAACCCTTTAGCTTTGAAAGTTTTGGGATCATTGCTTCGTTCCAAAAGTAAAAAAGAATGGGATAGTGCATTGGCTAAACTAAAAGAGAATCCCAATCCAGAAATTCAAAAGGTGTTGAGACTGAGCTATGATGAATTAGATGTTAAAGAGAAAAATATATTTCTAGACATTGCATGTTTTTTTAGAGGTTGTGGAAGAAACAAAGTAACAAAAATATTGGATGCTTGTGGTTTCTTTGCAGATATTGGGATAAGAAACCTTTTAGATAAGGCTCTTATAACTACTACTTCATATAATTGCATAGGAATGCATGACCTGATACAAGAAATGGGTAGGGAAATTGTTCGTGAAGAATCTCCTAAAAATATCGGAGGACGTAGCAGATTGTGGGACCCTGAGGAAGTCTGTAATGTATTGACAAATAATACAGGAACTGATGCAGTTGAAGGCATTTGCTTAGATATGACTCAAATTTCATGTATAAATCTAAGCTCCAAAGCATTCAAAAAGATGCCAAACCTAAGGTTACTTGCTTTCCAAGCCCTCAATCGGGACTTTAAGAGAATCAATTCGGTTAACCTGCCAACGGGTCTTGCATTATTGCCTAAGAACTTGAGGTATTTTGGGTGGAATTCGTATCCATTAAAGTCTCTACCATCAACTTTTCATCCTGAGAAGCTTGTTGAGCTTTCCATGCCATACAGCAATGTCGAAAAACTTTGGAGTGGAGCACAGAAATTGTCGAGTTTAGAGAGAATTGACCTTAGTGAGTCCGTACACTTGATAGAGTGTCCAAATTTGTCAGGTGCCCCCAATCTTAAACATGTAATACTTGGCAAGTGTGAAAGCTTGTGTCAAGTTGATCCATCTATTTACACTCTGCCCAAGCTTGTGGAATTAGATGTGAGTGGATGCAAGTCGCTTCACAGCCTTTACAGCAGCACTTGTTCACCATCCTTGCGAAGATTTTACGCCTGGGGTTGCTTCATATTAATGCCCCCTAGTACCAGTGGTCCTTCTACAACTGATTTGTATTTAGAAGGGTCGTGTTTGAAGAATGAGCTTCCTTCATCAACTTTGCATATCAGAAATCTTGAAATCTTTTCTTCTTCCATTTGTGAGAGTCTTATGGATCTTCCTGAAAACTTTGCCTATCAAATCACACTTTCTGACTCAATGAAAAATGAACATGATACTTTGATCACCTTACATAAAGTACTACCTAGCTCTTGCTTCCGGTATGTAAGACGCCTATTTTTATGGTGTGTCACACTTTATCTGAACTCCCAGACAACATCTCCTTGTTATCATCTTTAG 4470 0.3955 MPNIRLFAFKGPNQDFERFNPVYLPKGLEFLPKNLRYFGWDGYPLKSLPLTFCPEKLVKLFLPHNNVEKLWNGVQNLPSLVSIDLSESPHLIECPNLSGAPNLKHVILTGCESMPLVDPSIFTLQKLVELDVRECKSLKSLCSITCSPSLRRFYTWGCSNLQDFTSILPSTSGPSTSGSYLEGSGLKNELPSSIFHIRNLEIFSSPISESLMDLPENFAYQITLSDSMKNEHDTLIILSKILPSSCFRYVKHLFFVLCHTLSELPDSISLLSSLEYLELSFCAVISLPESIKYLPRLKFLEVVECKMLQSIPALPQSIQGFLVRNCESIQNVLTSISEPSNNSNGCTLLLPNCIKLDRHSYLAILKDAIVRIELGAKPLSTEVLEDKEDASSDDDDDDDDDDDYHDMYISKAVRSGKICYLLPAENFRDWFHYRSTQALVTIELPPKCLGFVFYLVLSQFQLFYMGSHGNFGCECYWETSWREKINISFFIDESDLPNPWTIFDIKSDHVLFWYDEQGCKQIKDAIKEMKVNDKCTKYPKLTFKFFARTQNNEEVAIEECGFRWIYSSEDQIVEEGEGCESERCRETQKVEGSEYDEQEETVLPTVEFMQSVFGTQSNMEAEEIKDSRLSLEELLHIGFGRDLMPNTEANASNYDCSLFLLLRFCTGSCKINQMASSSLAPLKKYEVFISFRGEDTRANFTSHLHAALCRSHVETYIDYRIDKGDEVWPELEAAIKDSSLFLVVFSENYADSTWCLNELVEIMECKKNDGHEVIPVFYQTEPSHVRKQTGSYQKAFGKHKKQGKEKIRKWKDALYDASNISGFDSSSYRTEFDLIEDIIKVVLQKLNHKYKNEFRCLFIPDENYSGIESLVKIDSEDVRIIGIWGMGGIGKTTLAAAIFHKFSSQYEDSCFLENVTEESNRHGTNYICNRLLSKLLREDLGIDTAKVIPAAVMRRLRRMKAFIVLDDVKTLELLENMVGVGRDWLGAGSKVIVTTRDKHVLVSGGVDEIHEVKQMNFQNSLRLFSLNAFKKTYPEKGYEEVSNKAIAYANGNPLALKVLGSLLRSKSKKEWDSALAKLKENPNPEIQKVLRLSYDELDVKEKNIFLDIACFFRGCGRNKVTKILDACGFFADIGIRNLLDKALITTTSYNCIGMHDLIQEMGREIVREESPKNIGGRSRLWDPEEVCNVLTNNTGTDAVEGICLDMTQISCINLSSKAFKKMPNLRLLAFQALNRDFKRINSVNLPTGLALLPKNLRYFGWNSYPLKSLPSTFHPEKLVELSMPYSNVEKLWSGAQKLSSLERIDLSESVHLIECPNLSGAPNLKHVILGKCESLCQVDPSIYTLPKLVELDVSGCKSLHSLYSSTCSPSLRRFYAWGCFILMPPSTSGPSTTDLYLEGSCLKNELPSSTLHIRNLEIFSSSICESLMDLPENFAYQITLSDSMKNEHDTLITLHKVLPSSCFRYVRRLFLWCVTLYLNSQTTSPCYHL* 1490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01979 1489 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 165 IPR044974 GO:0006952
Rops4g01979 1489 SUPERFAMILY "Winged helix" DNA-binding domain 1085 1190 IPR036390 -
Rops4g01979 1489 SUPERFAMILY L domain-like 28 315 - -
Rops4g01979 1489 SUPERFAMILY L domain-like 1171 1432 - -
Rops4g01979 1489 Gene3D - 1015 1098 IPR042197 -
Rops4g01979 1489 PRINTS Disease resistance protein signature 880 895 - -
Rops4g01979 1489 PRINTS Disease resistance protein signature 1049 1063 - -
Rops4g01979 1489 PRINTS Disease resistance protein signature 1343 1359 - -
Rops4g01979 1489 PRINTS Disease resistance protein signature 955 969 - -
Rops4g01979 1489 Pfam NB-ARC domain 868 1096 IPR002182 GO:0043531
Rops4g01979 1489 SMART till_3 684 820 IPR000157 GO:0007165
Rops4g01979 1489 FunFam Disease resistance protein (TIR-NBS-LRR class) 682 848 - -
Rops4g01979 1489 Pfam Leucine Rich Repeat 1277 1296 IPR011713 -
Rops4g01979 1489 Gene3D Ribonuclease Inhibitor 1188 1454 IPR032675 -
Rops4g01979 1489 Gene3D - 682 854 IPR035897 -
Rops4g01979 1489 Gene3D Ribonuclease Inhibitor 179 360 IPR032675 -
Rops4g01979 1489 Gene3D Ribonuclease Inhibitor 16 175 IPR032675 -
Rops4g01979 1489 FunFam Disease resistance protein (TIR-NBS-LRR class) 1016 1098 - -
Rops4g01979 1489 ProSiteProfiles TIR domain profile. 683 846 IPR000157 GO:0007165
Rops4g01979 1489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 849 1108 IPR027417 -
Rops4g01979 1489 Gene3D - 855 1007 IPR027417 -
Rops4g01979 1489 SUPERFAMILY Toll/Interleukin receptor TIR domain 674 823 IPR035897 -
Rops4g01979 1489 Pfam TIR domain 684 852 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01979 Rops-Chr4 45586567 45601778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01979 1 317 WRKY Transcription Factor Family AT4G12020 31.385 4.01e-28 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01979 - - mtr:25502326 1089.33