Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01977 ATGGCTTCTTCTTCCTCTGTCGCTCCTCTCAAAAAATATGAAGTTTTCATCAGCTTTAGGGGCGAGGACACTCGCCATAACTTCACAAGCTATCTTCACGCTGCTTTGTGCAGAAGCCATGTGGAAACCTACATAGACTACAGGATCGAGAAAGGAGATGTGGTATGGCCAGAACTTGAGAGAGCCATCAAAGACTCCTCTCTCTTTTTGGTTGTCTTCTCTGAAAACTATGCGGATTCAACGTGGTGTTTGAATGAACTGATTGAAATTATGGAGTGTAAGAAACATGGGCAAGATGTTATTCCAGTGTTCTACCACATAGACCCTTCGCACGTGCGGAAGCAGACAGGGAGTTACCAAGCAGCGTTTGAAAAACACAATTACAGCGAGGAGAAGATGCAAAAGTGGAAGGATGCTCTGTCTGATGCAGCCAATATATCTGGCTTCCATTGTAGTTCATCCAGGACTGAATCTGACTTGATTGAAGACATCATCAAACTTGTTTCACGAAAACTAAATCACAAGTATAAAAATGAACTTGGATGTCTGTTCATACCCGACGGAAACTGTTCACGCATTGAAGCTTCAATAAAAATTGATCCGAAAAATGTGCGAATCATTGGAATTTGGGGCATGGGAGGCATAGGCAAGACAACTCTTGCTGCTGCTATTTTTCATAAGGTCTCTTCCCGATATGAAGGTAGTTGCTTCTTAGAAAAAGTGACCGAAGAATCAGAAAGGCATGGAACCAATTACATATGTAATAGACTTCTTACTAAGTTATTAGGGAAAGATCCTGACATTGACACTACTAAAGTAATACCCTCTGCTGTCAAGAGAAGACTCAAACGTATGAAAGTTTTCGTTGTGTTAGATGATGTCAAAACTTCAGAACTTCTGGAGAACTTGGTTGTAGTAGGACGTGATTGGCTAGGAGCTGGTAGCAGAGTTATTGTGACAACCAGAGATAAGAATGTGCTTAATGAAAGAGTTGATGAAATATATGAAGTCAAAGAAATGAATTGGGAAAACTCCCTTCGACTCTTTAGCTTGAATGCCTTTAACAAAATAAATCCTAAAGAGGGATATGAGGAGGTTTCAAATGAAGCAATTGCTTATGCCAAAGGCATCCCTTTAGCTTTAAAAGTTTTGGGATCATTTCTTCGTTCCAAATGTAAAAATGAATGGGATAGTGCATTGACTAAATTGAAGAAGATTCCCAATCAAAAAATTCAGAAGGTGCTGAGATTGAGCTATGATGAATTAGATGATACAGAGAAAAATATATTTCTAGACATTGCATTTGTCTTTAGAGGGTTCACAAGAAACAGAGTAACAAAAATATTAGATGCTTGTGGTTTCTTTGCAGAAACAGGGTTAAGAAACCTTTTAGACAAGACCCTTATAACTACTACTTCAAATAATTGCATAGAAATGCATGACTTGATGCAAGAGATGGGTAGGGAAATTGTTCGTGAAGAATCTCCTAAATATCCTGGACAACGCAGCAGATTGTGTGACCCTGAGGAAATATGTGATGTACTGACAAATAATAGTGGAACTGATGCAATTGAAGTCATATGTCTAGACATGACTCAAATCAAACGTAAAGATCCCAGCCCCAAAGCATTTGAAAAGATGCCGAACCTAAGGATACTTTCTTTCCAGGATCACGATGGGGAGTATAAGATAATTAATTCTATGAACCCGTCGATGGGTCTTGAATTATTGTCCAAGAACTTGAGGTACTTTGGGTGGGAGTCATATCCATTAAAGTCTCCGCCATCAACTTTTGGTCTAGAGAAGCTTGTTGAGCTTTCCCTGCCATACAGCAATGTGGAAAAACTCTGGAGCGGAGTACAGAATCTGCCGAGTTTAGAGAGAATTGACCTTAGTTCGTCGAAAAGCTTGATAGAGTGTCCAAATTTGTCTGGTGCCCCAAATCTTCAATGCGTAAGACTCACATGGTGTGAAAGCTTGTCTCAAGTTGATCCATCTATTTTCACTCTCCCAAAGCTTGTAGAATTACATGTGTCTTACTGCAAGTCGCTCAAGAGTCTCTGCAGCGCCACCTGTTTACCACGTTTGCGACGACTTGAGGCCAATGGTTGCTCTAATATCCAAAAACTTTGGAGCGGAGTACAGAATCTGCCGAGTTTAAAGACAATTGGACTTCGTGAGTTGATACGCTTGATAGAGTGTCCAAATTTGTATGGTGCCCCAAATCTTAAATATGTAAGTCTCGCCAGCTGTGAAAGTTTGTCTCAAGTTGATCCATCTATTTACACTCTCACGAAGCTTGTAGAATTAGATGTGTCAAACTGCGAGTCGCTCAAGAGTCTCAGCAGCGTCACCTGTTCACCACATTTGCGACGACTTGCGGCCAATGGTTGCTCTAATATCCAAGAATTGACATTAATGCCCCCCAGTACCAATGGTCATTCTACAACTGATTTGTATTTTGAAAGGTCAGGTTTGAATAGTGAGCTTCCTTCATCAACTTTGCATATAGGAAATCTTGAAAGTTTTTCTTTTCCCATCAGTGAGTGTCTTACGGATCTACCTGAAAATTTTGCCTCTGAAATCCAACTTTCTGACTCAAGGAAAGATGGACTTGGTAATTCAATCACCTCAAGTAAAGTACTATCTAGCTCTTGCTTCCGATGTGTAAGACGTTTGTTTTTTTTCCAATGTCTCACTATATCTGAACTCCCAAACATCTCCGAGTTATCATTGTTAGAGCATTTACAACTATATGGTAGTGGTGTCATAAGCTTACCTGAAAGCATTAAGAATCTTCCACGACTCAAAGATCTTTCAGTCGATCAATGTCAAATGCTTCGATCTATACCTGCGCTTCCACAATCCATTCAGTCTTTCTGTGTTCTGGATTGCAAATCTCTTCAGAATGTGTTAACTTCAACGAGTGAACCACCCAAAAAACACAACGACTGTATTTTTCTGCTTCAAAACTGGATAAATTTGGATCGAAATTCATTCAATGCCATTTGGAAATATGCCATTGATAGGATCGAACTTGCAGCCAAACTAATGTCTGTAGAAGCATTAGAAAACACAGAAGATGCATCCTGCGATGACGATGATGATGTTGTTGAGATTCTCTACATGTTACCATCTGGAAACTGCAAAGTTGGAGACTTGTTTCATTATCACTCTACTCAAGCTTCTGTCACCATTGAACTTCCCCGTAATCATTTGGGTTTCTTTGCCTACATCGTTCTTTTTAAAGATCAATCATTCGATGGAACGTTGGGATGTGAATGCGGCTTGGAATCTAATTGGGGTGAAAGGATCACCATAAAAAGATTCTATGAGGACTGTGGTTTAGATTACTTGGAGTCAGATCATGTGTTTTTATGGTATGAAGCAGATTTTTACACGGAGATAATGGAAGCAATCGAAAAAATAAAAGCCAGTGATTGGTGCACAACTCAAAATCCAAAGCTTACATTGAAATTTTTTGCTCTAACTGAAAATGAAGAGGAAGCATCGATAAAAGAGTGTGGATTTCACTGGATATATCCCTCAAAAGATCAAATTGTCAAGGAGAAAGAAGAAAGATATGCATCCAAGAGATGTAGGGAAACTCTCAGAGTCGAGGGCTCTGAATCTGATGAGCGAGGAGAAGCAGTTCTTCCAACAAAGAAATTAAAGCAAAGTGTCTTTGGAACTCCCTCCAATCTGGAAGCCGAAGAAATGGAAGACTTGAGGCGTTTGCTTGAAGAACTGCATCTTTGA 3759 0.3977 MASSSSVAPLKKYEVFISFRGEDTRHNFTSYLHAALCRSHVETYIDYRIEKGDVVWPELERAIKDSSLFLVVFSENYADSTWCLNELIEIMECKKHGQDVIPVFYHIDPSHVRKQTGSYQAAFEKHNYSEEKMQKWKDALSDAANISGFHCSSSRTESDLIEDIIKLVSRKLNHKYKNELGCLFIPDGNCSRIEASIKIDPKNVRIIGIWGMGGIGKTTLAAAIFHKVSSRYEGSCFLEKVTEESERHGTNYICNRLLTKLLGKDPDIDTTKVIPSAVKRRLKRMKVFVVLDDVKTSELLENLVVVGRDWLGAGSRVIVTTRDKNVLNERVDEIYEVKEMNWENSLRLFSLNAFNKINPKEGYEEVSNEAIAYAKGIPLALKVLGSFLRSKCKNEWDSALTKLKKIPNQKIQKVLRLSYDELDDTEKNIFLDIAFVFRGFTRNRVTKILDACGFFAETGLRNLLDKTLITTTSNNCIEMHDLMQEMGREIVREESPKYPGQRSRLCDPEEICDVLTNNSGTDAIEVICLDMTQIKRKDPSPKAFEKMPNLRILSFQDHDGEYKIINSMNPSMGLELLSKNLRYFGWESYPLKSPPSTFGLEKLVELSLPYSNVEKLWSGVQNLPSLERIDLSSSKSLIECPNLSGAPNLQCVRLTWCESLSQVDPSIFTLPKLVELHVSYCKSLKSLCSATCLPRLRRLEANGCSNIQKLWSGVQNLPSLKTIGLRELIRLIECPNLYGAPNLKYVSLASCESLSQVDPSIYTLTKLVELDVSNCESLKSLSSVTCSPHLRRLAANGCSNIQELTLMPPSTNGHSTTDLYFERSGLNSELPSSTLHIGNLESFSFPISECLTDLPENFASEIQLSDSRKDGLGNSITSSKVLSSSCFRCVRRLFFFQCLTISELPNISELSLLEHLQLYGSGVISLPESIKNLPRLKDLSVDQCQMLRSIPALPQSIQSFCVLDCKSLQNVLTSTSEPPKKHNDCIFLLQNWINLDRNSFNAIWKYAIDRIELAAKLMSVEALENTEDASCDDDDDVVEILYMLPSGNCKVGDLFHYHSTQASVTIELPRNHLGFFAYIVLFKDQSFDGTLGCECGLESNWGERITIKRFYEDCGLDYLESDHVFLWYEADFYTEIMEAIEKIKASDWCTTQNPKLTLKFFALTENEEEASIKECGFHWIYPSKDQIVKEKEERYASKRCRETLRVEGSESDERGEAVLPTKKLKQSVFGTPSNLEAEEMEDLRRLLEELHL* 1253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01977 1252 PRINTS Disease resistance protein signature 281 295 - -
Rops4g01977 1252 PRINTS Disease resistance protein signature 374 388 - -
Rops4g01977 1252 PRINTS Disease resistance protein signature 206 221 - -
Rops4g01977 1252 PRINTS Disease resistance protein signature 621 637 - -
Rops4g01977 1252 Gene3D - 340 423 IPR042197 -
Rops4g01977 1252 Pfam NB-ARC domain 204 422 IPR002182 GO:0043531
Rops4g01977 1252 SUPERFAMILY L domain-like 874 977 - -
Rops4g01977 1252 SMART till_3 12 146 IPR000157 GO:0007165
Rops4g01977 1252 Gene3D Ribonuclease Inhibitor 814 985 IPR032675 -
Rops4g01977 1252 Gene3D Ribonuclease Inhibitor 690 813 IPR032675 -
Rops4g01977 1252 ProSiteProfiles TIR domain profile. 11 172 IPR000157 GO:0007165
Rops4g01977 1252 Pfam TIR domain 12 178 IPR000157 GO:0007165
Rops4g01977 1252 Gene3D - 186 338 IPR027417 -
Rops4g01977 1252 Pfam Leucine Rich Repeat 602 621 IPR011713 -
Rops4g01977 1252 Gene3D - 10 179 IPR035897 -
Rops4g01977 1252 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 710 IPR044974 GO:0006952
Rops4g01977 1252 Gene3D Ribonuclease Inhibitor 512 689 IPR032675 -
Rops4g01977 1252 FunFam Disease resistance protein (TIR-NBS-LRR class) 341 423 - -
Rops4g01977 1252 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 433 IPR027417 -
Rops4g01977 1252 SUPERFAMILY L domain-like 479 859 - -
Rops4g01977 1252 FunFam Disease resistance protein (TIR-NBS-LRR class) 10 174 - -
Rops4g01977 1252 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 149 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01977 Rops-Chr4 45550228 45556537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01977 11 845 WRKY Transcription Factor Family AT4G12020 31.962 6.54e-98 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01977 - - mtr:25502326 1106.66