Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01975 ATGAACAACAACAACAACAACAACAACATCTCAAGAAATGGTAACAGCACCACCCAGGCTTGTGCTGCATGTAAGTACCAACGTAGGAAATGCGCTCCTGACTGCATTCTCGCACCTTATTTTCCTCACGATCGCCAACGTCAATTCCTCAATGCCCATAAATTATTTGGTGTTAGCAACATCATTAAAATCATCAAATTCCTTGACCCTTCTCTTAAGGACCAAGCCATGAGAACCATCATTTACCAATCTGATATGAGAGCTAGTGACCCTGTTGGTGGTTGTTGCAAGTACATTCAAGATCTTCAAGCTCAGATTGAATATTACAAGGCAGAACTTGACCTTGTCCTTCAACAACTCGCCATTTTCAGAGCTCAAGCTCAACAACAACAACAACAACAGCATGGTCTTTATGGTGCTCCAAATGTTTCTGTCAATGATGATCAAGTTTTGAATGCAGATCCATTGGGGTTGTATACTCATTACCAATATGTTCAACAAGTGCCACAACATGACCAATATGTTATGGTGCATGAAACAAATGAAAACAATAGTGCAACCCCTTTGCAAGAACATGTTAATGCGTGGGCCATGCAGAACTCTATGTCCCTTTCATCGCTTTCATGGCATGGCCAGAATAGTAATGCCAGTGATGAGTATGATCACAAGCCAATGCTTGATATACCCTCTGATGAAAGGAACGAGTTAGGATTTGAATCTGAAGAATTAGTCCACCGCAGTGATGAGGCAGTTTTATTTAAGATAGACGACGCAGTAATAAAAGCAGAGGCTGACTGCATCCAACAAGCTCAAGACCATGATCTGAAAGGCGCAGCTACTTTGTTTACTCTCACAAATTGTACTAGCTGA 870 0.4138 MNNNNNNNNISRNGNSTTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNIIKIIKFLDPSLKDQAMRTIIYQSDMRASDPVGGCCKYIQDLQAQIEYYKAELDLVLQQLAIFRAQAQQQQQQQHGLYGAPNVSVNDDQVLNADPLGLYTHYQYVQQVPQHDQYVMVHETNENNSATPLQEHVNAWAMQNSMSLSSLSWHGQNSNASDEYDHKPMLDIPSDERNELGFESEELVHRSDEAVLFKIDDAVIKAEADCIQQAQDHDLKGAATLFTLTNCTS* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01975 289 Coils Coil 99 119 - -
Rops4g01975 289 ProSiteProfiles LOB domain profile. 19 120 IPR004883 -
Rops4g01975 289 Pfam Lateral organ boundaries (LOB) domain 20 115 IPR004883 -
Rops4g01975 289 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 18 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01975 Rops-Chr4 45521003 45522528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01975 19 134 AS2 family AT3G13850 71.552 1.17e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops4g01975 LOB 8.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01975 - - gmx:100786728 395.201