Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01973 ATGATGAAAGGTTTGATGTTCCACCAACAACAGCAACAGCAACCAGTGGTGGAGGAGAACATGTCAAATTTGACTTCTGCATCTGGTGAAGCTAGTGTTTCCTCAAGCAACAGAAATGAAATTGGTACTAGTTACCCTCAACAAAACTTGGCACCACCACCAACTCAAACTCAACCAGCAAAGAAAAAGAGAAACCTTCCTGGCAACCCAGACCCAGATGCTGAGGTTATTGCCTTGTCGCCAAAGAGTCTTCTGGCCACAAATAGGTTCATTTGTGAGATCTGTAACAAAGGGTTTCAAAGAGATCAGAATCTTCAACTTCATAGAAGAGGGCATAATTTGCCATGGAAGCTGAAGCAGAGAACAAGTAAAGAGATAAGGAAGAAGGTGTATGTGTGTCCAGAACCAACTTGCGTGCACCATGACCCATCAAGGGCCTTAGGGGACCTAACTGGGATCAAGAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGATAAGTGTTCCAAGAAATATGCAGTTCGATCCGATTGGAAAGCTCACTCCAAGACCTGTGGCACAAGAGAGTACAGATGTGACTGTGGAACCCTTTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCTTTCTGTGATGCATTAGCAGAGGAGAGTGCAAGAGCAATCACAGGCACAACAACCAACCCACTTCTACCCTCACAACAACAAACTCCATCCTCTTCTCATCACATGATAAATCTCCAAACCCAACAACAATTCAATCCCCAAGACCTCCATGTTTTCCCATTGAAAAAAGAGCAAAGTTTCAATCTTGGTCCAGAAATACCCCCTTGGCTTGGCCCACCTACTGTTGTTGAACATCATCTCTCCTCATCCTCAACAATCTTCTCCCCAAGATTGGACCATGAATTTTCACAAACACATCATCATCAAGAAAACCCTAACCCTAGCCTTGGTCCCACTCTTCCTGCCTACCAAACAGTTCCTTCCCCACACATGTCAGCTACAGCATTGTTGCAGAAAGCAGCTCAGATGGGTGCAACCATGACCAGAACCACTGGTTCCTCTTCGCCAGCCATGATCAGGACCCACCAAAATGCTCACGTGTCTGCTGATTCTGCCAACAACAGTTCCAGTGGTTTTAGCCATGGCTTATCAACTTTCATGAACAAAGCTGCACCTTCTTCTGCTTCTGGTGTTCCTCCATCACTTCTTCATGATGTTATCAACTCTTTCTCTTCTCCTTCTAGCTTTGAAGGAACCCCTTTTGAGGATGCTTTTGGGGGCATTCTGAACTCAAAGAAAGATCAAAACTTGCATGATACCCTCTCAAAAACAACCACTGCCACCAATCTTGCCGGCGCCGCCGATGGTGGTGACGGAGGAAATGAAGGCTTGACGAGAGATTTCTTGGGTCTCAGGCCACTCTCTCATAGTGATATTCTCAGCATTGCTGGCATTGGAAACTGCATGAATGATCAAAACCAAGCTCAAAAGCCATGGCAAGGTTAG 1521 0.4556 MMKGLMFHQQQQQQPVVEENMSNLTSASGEASVSSSNRNEIGTSYPQQNLAPPPTQTQPAKKKRNLPGNPDPDAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVRSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITGTTTNPLLPSQQQTPSSSHHMINLQTQQQFNPQDLHVFPLKKEQSFNLGPEIPPWLGPPTVVEHHLSSSSTIFSPRLDHEFSQTHHHQENPNPSLGPTLPAYQTVPSPHMSATALLQKAAQMGATMTRTTGSSSPAMIRTHQNAHVSADSANNSSSGFSHGLSTFMNKAAPSSASGVPPSLLHDVINSFSSPSSFEGTPFEDAFGGILNSKKDQNLHDTLSKTTTATNLAGAADGGDGGNEGLTRDFLGLRPLSHSDILSIAGIGNCMNDQNQAQKPWQG* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01973 506 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Rops4g01973 506 SMART c2h2final6 166 186 IPR013087 -
Rops4g01973 506 SMART c2h2final6 90 112 IPR013087 -
Rops4g01973 506 SMART c2h2final6 131 161 IPR013087 -
Rops4g01973 506 FunFam protein indeterminate-domain 5, chloroplastic-like 144 223 - -
Rops4g01973 506 Gene3D Classic Zinc Finger 144 223 - -
Rops4g01973 506 SUPERFAMILY beta-beta-alpha zinc fingers 89 186 IPR036236 -
Rops4g01973 506 FunFam protein indeterminate-domain 12-like 69 137 - -
Rops4g01973 506 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Rops4g01973 506 MobiDBLite consensus disorder prediction 313 332 - -
Rops4g01973 506 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 33 495 IPR031140 -
Rops4g01973 506 Pfam Zinc-finger double-stranded RNA-binding 90 112 IPR022755 -
Rops4g01973 506 MobiDBLite consensus disorder prediction 307 332 - -
Rops4g01973 506 MobiDBLite consensus disorder prediction 1 63 - -
Rops4g01973 506 MobiDBLite consensus disorder prediction 1 75 - -
Rops4g01973 506 Gene3D Classic Zinc Finger 71 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01973 Rops-Chr4 45487213 45490107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01973 21 506 IDZ Gene Family AT3G13810 48.905 1.24e-140 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops4g01973 zf-C2H2_jaz 7.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01973 K25870 - jre:109012370 693.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00351 7 4576538 4579442 Rops4g01973 4 45487213 45490107 PCT