Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01964 ATGGGACACCACTCTTGCTGCAACAAGCAGAAGGTTAAAAGAGGGCTATGGTCACCTGAAGAAGATGAAAAACTCATCAACTACATCACAACTTATGGACATGGTTGTTGGAGTTCTGTCCCAAAACTTGCTGGTCTGCAGAGGTGTGGAAAGAGTTGCAGATTGAGATGGATAAATTATCTAAGACCTGATTTGAAACGTGGAAGTTTCTCTCCTCAAGAAGCAGCACTCATTATAGAACTCCACAGCATTCTAGGCAATAGGTGGGCTCAGATAGCCAAGCACCTACCTGGAAGAACAGATAATGAGGTGAAAAACTTTTGGAATTCAAGCATAAAGAAGAAACTCTTTTCTCATGATGTTCCTTCTTTAGCCACATTTTCTGATATTCACAACCATTTCAATATTGGTTCTGTGGAAAGTTTCTTCCCTTTTACTGAAAACCCTAATGTGATCCTAAACTTTCATCACCACCCAGACCAGCTATACATTCCCACCCCTTCCCCAAGCCTACAAGGTTTTGATCAAAATGATATTGCCAATTTCCTTCATATTCAGAACCCAATGCCAGAAACAGTACTACCATCCAATCCATCCTCTTATGAAGATACATGGTCATTGGGTTGTGTAGCTCTTCATGACAAACCAAATCAAGAAAATCAAATTACCAAAAGTGATACTACCACCCTACCTTATATTGATGACAAATTCATCAACCCAACTGCATTGCTGCAATATGAATGTCACTTAGTTGAACCCATTTTGCCAGAAGTCAGTGAGAGCATTGAAGATTATGCTTTTAGCATCCCGGATTCATCTGCTTCCAAGGAACATAAAGCTCCAGCAAATATTGATCAGTGCTATCCACCAAGTATTTATCCACAAGATCAAACTGTGGCAACCAATCAATTGGATTACATTGATGCCCTCATGTCATTATTGCCAACCTCATCATCAGTATCAAGCAGTCAAATAGTCACAAACCCTATTATTCCTTTAGGTTGGGAGCCTTGA 1014 0.4004 MGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLFSHDVPSLATFSDIHNHFNIGSVESFFPFTENPNVILNFHHHPDQLYIPTPSPSLQGFDQNDIANFLHIQNPMPETVLPSNPSSYEDTWSLGCVALHDKPNQENQITKSDTTTLPYIDDKFINPTALLQYECHLVEPILPEVSESIEDYAFSIPDSSASKEHKAPANIDQCYPPSIYPQDQTVATNQLDYIDALMSLLPTSSSVSSSQIVTNPIIPLGWEP* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01964 337 SMART sant 66 114 IPR001005 -
Rops4g01964 337 SMART sant 13 63 IPR001005 -
Rops4g01964 337 Gene3D - 69 116 - -
Rops4g01964 337 Gene3D - 11 67 - -
Rops4g01964 337 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops4g01964 337 FunFam Myb transcription factor 69 116 - -
Rops4g01964 337 CDD SANT 17 61 IPR001005 -
Rops4g01964 337 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops4g01964 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops4g01964 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops4g01964 337 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Rops4g01964 337 FunFam MYB transcription factor 6 66 - -
Rops4g01964 337 PANTHER MYB DOMAIN PROTEIN 55 1 156 - -
Rops4g01964 337 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Rops4g01964 337 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops4g01964 337 CDD SANT 69 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01964 Rops-Chr4 45356452 45357677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01964 1 167 MYB Transcription Factor Family AT3G13890 71.351 1.88e-82 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops4g01964 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01964 K09422 - gmx:100785147 508.064