Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01963 ATGGGTGGTTCAGGAAGTTGGTTTAAATCATTTATCTCTCTCAAAAAGTTCTCCATGAATGATCAAGAGAAGGGTAGTGATAAGAGTAAGAGAAAGTGGAGGTTATGGAGGAGTTCTTCAGAAGGGTTTGATTTTGGATCCTCCATGAAGAAGGGTGGTGGTGCTTGTGACAAGCCTTGTTGTTCTTCATTTGTGGTTAATGAAGAAGCATTTGCTGCTGCAGTGGCCACTGTGGTACGAACTCCACACAAAGACTTTGTGATGATCAAGCAGGAATGGGCTGCCATTCGCATTCAGGCTGTGTTTAGAGGCTTCTTGGCAAGACGAGCTTTGAGGGCCCTGAGGGCAGTGGTGAGGCTGCAAGCTATATTTCGTGGTCGACTAGTGAGAAAGCAAGCAGCTGTTACTCTAAGGTGTATGCAGGCTCTTGTGAGAGTTCAAGCACGTGTCAGGGCAAGGGATGTGAGGAACTCTCCAGAAGGGAAAGCTGTGCAGAAACTATTAAATGAGCATCACAACCAAGCTGATCCTGTTAAGCAGGCTGAGCAAGGGTGGTGTGACTTTCCAGGAACTGTGGAAGAAGTTAAAGCAAAACTAAAATTAAGGCAAGAAGGAGCAATTAAGAGGGATAGAACAATGGCATACTCTTTCTCTACCCAGCAATCAAGAGTGAGTGCTAGTCCAAACTCAAGAGCTGCTAAGCCAGTGACTCCTCTCAAACACGGCAACCTAGACAGTAAGAGCTTGGGAGGGAGCTTGTTAGAACGCTGGATGGCAGCTAAGCCATGGGAGAGCAGGTTGATGGAAAAGATCAATTTCAACTCGCCTGACATGACTCCATTGTCTAGTGAAAGTGATGATCATGTTCTCCCCTTTAATTCATATCAACAAAATGGCTCAGTCAAAGCAAAAAGGAATGGTGTGACAACCAGGGTATCAACTAAATCTCTTACAACAACTAGTCAATCAACTCCATCATCTTCAGCCATAAGCTCTGAATGCATGTATGATGATAGCCCTGTATCAACTTCATGTACATCTGGATCACCATCTCTACCATCTACCAACACTGTTTTGGTGGAACCAACAGAGGAAAGAAATGGTTGTAAACCAAGCTACATGAATTTGACAGCATCAACCAAAGCTAAACTGAAAGCTTTGAGAAGTTCTTCACAAAATTCAAAGAGACTCTTTATGGATGATTGTCTATCTCATAGCTCGAGAACAGACTTTCTAAGTGGAGATACTAGAAGCATTTCGGGTTCCTATTCTTCAGCTAATATATGGAAGGATCTCTATGCAACGCCTCTGAGGGCAAGTTATAAAAACCGATTTACACTGGGAGATGAGTAG 1353 0.4361 MGGSGSWFKSFISLKKFSMNDQEKGSDKSKRKWRLWRSSSEGFDFGSSMKKGGGACDKPCCSSFVVNEEAFAAAVATVVRTPHKDFVMIKQEWAAIRIQAVFRGFLARRALRALRAVVRLQAIFRGRLVRKQAAVTLRCMQALVRVQARVRARDVRNSPEGKAVQKLLNEHHNQADPVKQAEQGWCDFPGTVEEVKAKLKLRQEGAIKRDRTMAYSFSTQQSRVSASPNSRAAKPVTPLKHGNLDSKSLGGSLLERWMAAKPWESRLMEKINFNSPDMTPLSSESDDHVLPFNSYQQNGSVKAKRNGVTTRVSTKSLTTTSQSTPSSSAISSECMYDDSPVSTSCTSGSPSLPSTNTVLVEPTEERNGCKPSYMNLTASTKAKLKALRSSSQNSKRLFMDDCLSHSSRTDFLSGDTRSISGSYSSANIWKDLYATPLRASYKNRFTLGDE* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01963 450 MobiDBLite consensus disorder prediction 218 244 - -
Rops4g01963 450 SMART iq_5 113 134 IPR000048 GO:0005515
Rops4g01963 450 SMART iq_5 90 112 IPR000048 GO:0005515
Rops4g01963 450 ProSiteProfiles IQ motif profile. 115 142 IPR000048 GO:0005515
Rops4g01963 450 MobiDBLite consensus disorder prediction 218 232 - -
Rops4g01963 450 Gene3D - 91 133 - -
Rops4g01963 450 PANTHER IQ-DOMAIN 5-RELATED 1 408 - -
Rops4g01963 450 MobiDBLite consensus disorder prediction 298 333 - -
Rops4g01963 450 Pfam IQ calmodulin-binding motif 115 132 IPR000048 GO:0005515
Rops4g01963 450 Pfam IQ calmodulin-binding motif 93 112 IPR000048 GO:0005515
Rops4g01963 450 ProSiteProfiles IQ motif profile. 91 119 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01963 Rops-Chr4 45342372 45345096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01963 1 433 IQD Protein Family AT1G72670 43.707 2.45e-92 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01963 - - ahf:112710157 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00364 7 4729046 4731678 Rops4g01963 4 45342372 45345096 PCT