Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01960 ATGTCTTCTTCTGCTAAAGTGTACGATGTATTTCTTAACTTCCGAGGCGAGGATACCCGCTCCGGCTTCATCAGTTATCTTTACGATGCTCTGGATCAGAAATCAATCAAAACATTCATAGATGACCAGCTTCCTAAAGGACATGAGATTCGGCATGTACTCCTCAAAGCAATTGAGGACTCCCATGTATCCATTGTTGTTTTCTCAGAAGACTATGCTTCCTCCACATGGTGCTTGGAAGAACTGGTGAAAATACTTGAATGCAGAAAAGATCAGGGTCAGGTTGTTATACCTGTTTTCTATGAAACAGATCCGTCACACATAAGGAAGCAGACCGGCAGTTACGAGAAAGCATTCGCCAAACATGAGCCAGATCTCACTGACAAAGACAGCGAATCCAGTAAACAGAAAGTGTTGAAGTGGAGAGCTGCTCTCACTGAAGCAGCCAACATATCTGGATGGCACTCCCGAACTTCCAAGAAGGAATCTAACCTCGTCAAGAACGTTGTCAACGATGTAAAGAGAAAGCTAGACTTGAGGTACCCTACTGAACTGCAAGGCCTTGGCGTAGTAACTGAAAGAAATTGTAGAAAAGTGGAATCATTAATGAAAGATTTTCGAGTAATTGGAATTTGGGGTATGGGTGGAGTAGGTAAGTCAACAATTGCTAGTGTCTTGTTTGCCAAACTCTTTCCCCAATATGACAATGTCTGCTTCGTGGAAGATGCAAAAGAATATTCACTTGCTAAGCTTCTTTCTGAGCTATTCAAGGAAAACCGTTCCAAATCTCTTGGAGTATCCTCATTAGATCTGAGGAGGCTCAGGAGTATAAAGGTTCTTGTTGTAGTTGATGATGTGGATAGTTTTGATCGACTAGAATATTTGTGTGGAGAAAACAGGTACTTGAGCGACGACAGTAGACTCCTTATAACAACAAGAGATAAGCAAGTGCTTGTTAAAAGAGTTGATAAGATATACAAGGTCAAGGAATGGAAAACTACAGAATCTCTGGAGCTTTTCTGCTTAGAAGCCTTCCAGCGAAGTCATCCCCCAGAAGGTTATGCTGATCTCTCACAAGAGGCAGTCAATTATGCAGGGGGCGTCCCATTAGCTCTTAAAGTTTTGGGTTCATATCTTCGTGAGAAAAGTACGAGATTTTGGGAAAGTACCTTCACAAAACTCTATCTTAATCAGAAAATTCAAAAAGTGTTACAAGTTAGCTATGATGGATTAGATCCTCTGGAGCAGAAGATATTTCTAGACATTGCGTTTTTTTTCGAAGGAAGAAAGAAAGATCATGTGGTAAGGATACTAGATGCCTGTGGTTTCGAAGCAAGTAGCGGAATAGAAGTCCTTGAAGACAAAGCTTTGATAACTATCTCAAATAGCGATAGAATACAGATGCAAGACTTACTTCAAAAAATGGGTTTGGAAATAGTACGTAAAGAATGTAGAACTAACCCTGGAAGACGTACCCGATTGAGGAATGAGGAAGCTCATCAAGTAATTGAAGAAAACAAGGGGACTGATTCAATTGAAGGCATAACATTAGATTTGTCTCATATTAAAGATTTACCATTGCGTGCTGACACATTCGCAAAGATGAAAGCCTTAAGATTTCTTGAATTCTATACCCCATTGGGTCAGAGTTCTAGTATAACATACCCCGACCAACCTCGAGTTCTTGAGCCATTCTCTGACAAATTGAGGTATTTTGAATGGAGTGGATACCCTTATGAGTCTCTTCCGTCACGTTTTTGTGCTAAGTTGCTTGTTGAGATTCACATGCCACACAGCAATGTTAAACAACTTTGGCAGGGGATACAGGAACTTCATAATTTAGTGGGAATTGACCTAAGTGAATGCAAACAGTTTGTAAGGCTTCCGGATTTGTCCAAGGCGTCAAGACTTACATGGGTTGATCTCTCTGGATGTGAAAGTCTGCGGCATCTTCACCCATCTGTTTTATCCTCTGACACGCTTGTTACTTTGATACTGGACAGGTGTGCAAATCTTAGGAACGTTAAAGGTCAGAAGCATTTAAAATCTCTGGAGAAGATTAGTGTCAATGGCTGCGTAAATCTCAAGGAATTTGCAGTGTCCTCAGAATTGATCGAAAACTTGGATTTAAGCAATACAGGAATCGAAACATTGGACAAATCAATTGGGAGTCTACACAATCTTAAGTGGATTAAGTTAGAGGGTTTAAGACTAAGGCATCTTCTAACGGAGTTAGCTTCCCTGAAATCTCTTAAGGAACTAAAGCTTTCTGACGGTGTACAAGTAATTGAGAAAGAGCAGCTACATGTCTTGTTTGCTGGCTTACGATCCCTACAAATGCTACATTTGAAGAACTGTAGTAACTTGTCCGAACTCCCCGACAACATCAGCGATCTATCACGATTACGGGAATTAATGCTAGATGGAAGCAATGTGAAAGGGTTGCCTGAAAGCATCAAGCATCTTCAAAAGCTGGAAACTCTGTCCTTAGAGAATTGCAGGGAGCTTCTGTGCCTACCAGAGCTTCCACCCTTCATCAAATTGTTACGTGCCGTTAACTGCACGTCATTGAGGTCAGTGTCAAAGTTAAATAATTTGGCAACAGAGATGATGGGAAAGGCTAAAAACATTTCATTCAAGAATAGCTTGACATTGGATAGGGATTCACTCTATGCTATTATGGAAAGCCTCCATTTAACAATGGCGAGTGCTGCATTTCACAATGTGTTAGTAAGAAGACGCGATGTGGGCTGGCACAGCTACAACTATAACAGTATTAAGGCTTGTTTACCAGGAGAAAAGGTCCCAAAGCTGGTCGAAGATAGAAAAATTGGGTCCTCCATTACCATTAAACTTCCTAACAGTTTCAACTTGTTGGGCTTCATTTTCTGTGTGCTTCTTTCTCCAGCCGATGGAATGAAGAAGCATGGCACTAAAATAAAGTGTCAATGCCACTTGGCACAAGGTACAAATGATACATGGATAAATACTGATATCACGGAACTGAACTCGGATCATGTTTATGCTTGGTATGATCCATTCAATTGTAACAGCATTATCCACTCTCATGAACCAACGGTTCGTTTTGAGTTCTGTGTTATAAATGATGCGTGGGAAGTTGATGATTCAGTATGTATTAAAGAGTGTGGAGTAAGCCTCGTAAGGGTTTCACAATTGAAGAGTGTTTTATCTAAATTGGCCTTGGATTCGGATAAGAAAAAGGACTTGGAGATGGCAGTAGAATTGGAAAGCAATGGTCTGAGAAACGGGATGCAGAATCAACCATTGGACTCGAGTGAACAGAGTTCCACTGATAGTTTAGATGACTCAGAGACGATGGAACCAGATTCAGCTGAAGAAGGTAATGGAAGGAAAGACCGTTATTCTGAGGACATGAAATCTCCTAGCAAGAAAATCAAAACTGGTGCTGAAAGAAGTCACGGGCAGATCACTATTACAGAGTCTACAAATGCGGATAAAAATCCACAAGTTGAAGTTGGGGCTTCCTTTTTTTTTTTTGATCAGGCAAGAGAAAAGATAGTATTAATGCAGAGTACCAGGGGTTCCAAGCATCCTGTTCCTGATGTCGAAAACCAAGCCACTCGAACTATTGTGGAGCCTTCTATGCATGTTGAACCTCAAAAGGAATCAAATCGTCAGATTGAGGCTGAACAACCTCACATCGATTCAGAACCTACTCAAACCAAATACCAAGTGCTTACTCCAAGTGAAATTGCAAAAGAATTTGACACTAGTGATTCCTCTGTGGAAATTTTGGATGGTTCGACTTCTCAGCCTTTTATGGAACAGTTTCAAGGAAATACTCGAGAACCAACACCTTTAGCTATGGTCCTTCCGAATGAGTCTCATGAAGGTGATCAACAAATTCCTCCCACTTTGACTCCATCAGTTCTAATTCCAACTCCTCCTGAAGTGCATCCAAGTCTATCAACCAGTCAAAGTGCTTCATTTCCCTTCGAAGATGAAAATATCAATCAAGTAGATGAAATGGATTTGGATCTGGACTACTTGAAACAATTAATGAATGAAGATCCACTTGCTGCCTTAGAAGTTGCCGTCTGGGGCAAAAGTTGGACCCCTGTTGAAACCCCCTCAACATCCAATATGTCCCAACAAGATCCAATTGAGTCTTCTACTTCTCTTTGGAAAAATTTGCTCAACGAATTGAAAAATTTGATTACTGATAAGTCTTTTGTTCGAAGTCTCATTGATGATCAGAAGTGTGACGAAGTTAAGACAATTGTTGCTCAAATCCAGGATCATGAAGAGGACATTCCGGTCCAAACCTTTGAATGGTTAACAGGATTTTTGGATTCATATCATGACATGGTCAAAGCTATTAGGGACACTGAACAAAACAAAACAAGACAAAATGAACTGATTGCGTCTCAACAAGCTGTTTTAGAAGAAGCAAAGCACTCGAAAGCAGAATTAGACCGAACAAAAGGGTTGATTAATGCTGCTCAAGGTAGGCTTCAAGAAATTAACAAGGAGATCGCCTACATGGAGGCTCAGTTGGCACAGAAGAGAGGGATTGGTCAAATTATTCAATCAAGCCTGGAACTTAGTGGAAAGAAAGAAACAGAGCTTTCTTCAAAGTGTCAAGAGTTCGACCAAATTGCTACTGCACATGCTGATTCTCTAAAAGAGCTTGAAGAAAAGCAGAAATCCTTTGATAAGGCATTTGCTGTGGCAAAGGCTGAGTTGAAGCTCATATTAAAGAGCTTTGATATGGGAATTAAGATCTTCGAAGTGCTGGTTTCTTGTCTTCTCTTCTCAGACATGGCATCCTATGGCTTGTGTCCTTCAATAAAAAATATTCTTCTTTTAGACTCTGAAGGGAAGCGTGTGGCAGTCAAGTATTACTCAGATGACTGGCCAACAAATAATTCAAAGTTAGCTTTTGAGAAGTTTGTATTCAGTAAGACTGTTAAGACAAATGCTCGCACAGAAGCTGAGGTAACACTACTTGAGAACAATATCATTATTTACAAATTTGTGCAAGACCTGCATTTCTTTGTCACTGGTGGTGATGATGAAAATGAGCTCATTTTGGCATCGGTTCTTCAAGGTTTCTTTGATGCAGTCACCCTTCTGCTGAGGAACAATGTTGACAAAAGCGAGGCACTTGAGAACTTGGATCTCATTCTTTTATGTCTTGATGAGATTGTTGATGGCGGGATGATACTTGAAACAAATGGACCTCTTATTGCTGAGAAAGTGACCTCCCATAGCTTTGATGCTGATGCCCCCTTATCAGAGCAGACTCTAACTCAAGCATGGGCTACAGCCAGAGAACATTTGACAAGAACCCTTTTAAAATGA 5346 0.4055 MSSSAKVYDVFLNFRGEDTRSGFISYLYDALDQKSIKTFIDDQLPKGHEIRHVLLKAIEDSHVSIVVFSEDYASSTWCLEELVKILECRKDQGQVVIPVFYETDPSHIRKQTGSYEKAFAKHEPDLTDKDSESSKQKVLKWRAALTEAANISGWHSRTSKKESNLVKNVVNDVKRKLDLRYPTELQGLGVVTERNCRKVESLMKDFRVIGIWGMGGVGKSTIASVLFAKLFPQYDNVCFVEDAKEYSLAKLLSELFKENRSKSLGVSSLDLRRLRSIKVLVVVDDVDSFDRLEYLCGENRYLSDDSRLLITTRDKQVLVKRVDKIYKVKEWKTTESLELFCLEAFQRSHPPEGYADLSQEAVNYAGGVPLALKVLGSYLREKSTRFWESTFTKLYLNQKIQKVLQVSYDGLDPLEQKIFLDIAFFFEGRKKDHVVRILDACGFEASSGIEVLEDKALITISNSDRIQMQDLLQKMGLEIVRKECRTNPGRRTRLRNEEAHQVIEENKGTDSIEGITLDLSHIKDLPLRADTFAKMKALRFLEFYTPLGQSSSITYPDQPRVLEPFSDKLRYFEWSGYPYESLPSRFCAKLLVEIHMPHSNVKQLWQGIQELHNLVGIDLSECKQFVRLPDLSKASRLTWVDLSGCESLRHLHPSVLSSDTLVTLILDRCANLRNVKGQKHLKSLEKISVNGCVNLKEFAVSSELIENLDLSNTGIETLDKSIGSLHNLKWIKLEGLRLRHLLTELASLKSLKELKLSDGVQVIEKEQLHVLFAGLRSLQMLHLKNCSNLSELPDNISDLSRLRELMLDGSNVKGLPESIKHLQKLETLSLENCRELLCLPELPPFIKLLRAVNCTSLRSVSKLNNLATEMMGKAKNISFKNSLTLDRDSLYAIMESLHLTMASAAFHNVLVRRRDVGWHSYNYNSIKACLPGEKVPKLVEDRKIGSSITIKLPNSFNLLGFIFCVLLSPADGMKKHGTKIKCQCHLAQGTNDTWINTDITELNSDHVYAWYDPFNCNSIIHSHEPTVRFEFCVINDAWEVDDSVCIKECGVSLVRVSQLKSVLSKLALDSDKKKDLEMAVELESNGLRNGMQNQPLDSSEQSSTDSLDDSETMEPDSAEEGNGRKDRYSEDMKSPSKKIKTGAERSHGQITITESTNADKNPQVEVGASFFFFDQAREKIVLMQSTRGSKHPVPDVENQATRTIVEPSMHVEPQKESNRQIEAEQPHIDSEPTQTKYQVLTPSEIAKEFDTSDSSVEILDGSTSQPFMEQFQGNTREPTPLAMVLPNESHEGDQQIPPTLTPSVLIPTPPEVHPSLSTSQSASFPFEDENINQVDEMDLDLDYLKQLMNEDPLAALEVAVWGKSWTPVETPSTSNMSQQDPIESSTSLWKNLLNELKNLITDKSFVRSLIDDQKCDEVKTIVAQIQDHEEDIPVQTFEWLTGFLDSYHDMVKAIRDTEQNKTRQNELIASQQAVLEEAKHSKAELDRTKGLINAAQGRLQEINKEIAYMEAQLAQKRGIGQIIQSSLELSGKKETELSSKCQEFDQIATAHADSLKELEEKQKSFDKAFAVAKAELKLILKSFDMGIKIFEVLVSCLLFSDMASYGLCPSIKNILLLDSEGKRVAVKYYSDDWPTNNSKLAFEKFVFSKTVKTNARTEAEVTLLENNIIIYKFVQDLHFFVTGGDDENELILASVLQGFFDAVTLLLRNNVDKSEALENLDLILLCLDEIVDGGMILETNGPLIAEKVTSHSFDADAPLSEQTLTQAWATAREHLTRTLLK* 1782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01960 1781 Pfam Clathrin adaptor complex small chain 1611 1749 IPR022775 -
Rops4g01960 1781 SMART till_3 7 151 IPR000157 GO:0007165
Rops4g01960 1781 MobiDBLite consensus disorder prediction 1086 1106 - -
Rops4g01960 1781 Pfam TIR domain 8 181 IPR000157 GO:0007165
Rops4g01960 1781 MobiDBLite consensus disorder prediction 1117 1144 - -
Rops4g01960 1781 MobiDBLite consensus disorder prediction 1084 1147 - -
Rops4g01960 1781 Pfam Leucine Rich Repeat 591 609 IPR011713 -
Rops4g01960 1781 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 154 IPR035897 -
Rops4g01960 1781 ProSiteProfiles TIR domain profile. 6 177 IPR000157 GO:0007165
Rops4g01960 1781 SUPERFAMILY SNARE-like 1611 1752 IPR011012 -
Rops4g01960 1781 CDD Zeta-COP 1612 1747 - -
Rops4g01960 1781 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 698 IPR044974 GO:0006952
Rops4g01960 1781 SUPERFAMILY L domain-like 517 869 - -
Rops4g01960 1781 Gene3D - 332 412 IPR042197 -
Rops4g01960 1781 Gene3D - 178 326 IPR027417 -
Rops4g01960 1781 Gene3D - 1607 1751 - -
Rops4g01960 1781 Pfam NB-ARC domain 202 395 IPR002182 GO:0043531
Rops4g01960 1781 Pfam C-JID domain 930 1054 IPR045344 -
Rops4g01960 1781 PRINTS Disease resistance protein signature 820 836 - -
Rops4g01960 1781 PRINTS Disease resistance protein signature 208 223 - -
Rops4g01960 1781 PRINTS Disease resistance protein signature 273 287 - -
Rops4g01960 1781 PRINTS Disease resistance protein signature 365 379 - -
Rops4g01960 1781 FunFam Coatomer subunit zeta-2 1605 1751 - -
Rops4g01960 1781 Coils Coil 1555 1575 - -
Rops4g01960 1781 SUPERFAMILY "Winged helix" DNA-binding domain 399 485 IPR036390 -
Rops4g01960 1781 FunFam Disease resistance protein (TIR-NBS-LRR class) 4 179 - -
Rops4g01960 1781 Gene3D - 5 177 IPR035897 -
Rops4g01960 1781 Coils Coil 1485 1512 - -
Rops4g01960 1781 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 422 IPR027417 -
Rops4g01960 1781 Gene3D Ribonuclease Inhibitor 704 881 IPR032675 -
Rops4g01960 1781 Gene3D Ribonuclease Inhibitor 461 703 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01960 Rops-Chr4 45269541 45292375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01960 775 870 WRKY Transcription Factor Family AT4G12020 35.417 7.66e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01960 - - cam:101515491 1355.89