Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01953 ATGTATTCCTCTCCCAAAGAGTACGATGTGTTCATTAGCTTCAGGGGCGAGGACACCTGTACTGACTTCATAGACCATCTTCACACGGCTCTCCGCGAGAAAAAGATCAAAACATTCATTGATTATAATCTTATCGAATATAATCTTGAAAAGGGAGAGGAGATTGGGTCCTCACTTATCGCAGCAATCCAGAACTCACATATATCCGTCGTCATTTTCTCAGGAAACTATGCTTCCTCAAAGTGGTGCTTGGAAGAACTCCGCCAAATACACAAATGCAGAAAATATCATGGACAGGTTGTTATACCTGTGTTCTACAAAATAGATCCATCACATGTGCGTGGGCAGATTGACAGTTACGAGACAGCATTCACAAGACATGAGGGAGATCTCGACCAAGAAAAAGTGTCTCAGCGGAGAGATGCTCTCACTGAAACCGCCAATATAGCTGGATGGGACTCTCGTAACTATAAGGATGAATCTGAAGTCATCGAGAACATTGTGAATGATGTTTGGAAAAAAATGTCCCTCAAGGATCCTAAAGAACTGAATGGCCTTGTTGAAATTGATGAAAATAGGCGAAACATTGAATTATTACTGAATAAATCTCCTAGAATTGGAATTTGGGGCATGGAGGGAATAGGAAAGACAACCATAGCCAAAGAGATGTTTGCCAAACACTTTGCACAATATGATAGTGTATGTTTCTTTGAAAACGTAAGAGAAGAATCAGAAAAGTTGGGAATAACATTCGTATGTGATAAGATTCTCAGTGAGCTACTAAAGAGACCAATTACCACATCTGATGCTCTTGGACCTACATTCATACAGAGGAAGCTCAATAGTAGACTCATTATAACAACAAGAGACGAGCACACACTTAGTAAAATGGTTGATAAGATATACAAGGTCTCAGAATGGAAGTTTCCAGAATCTCTTCAGCTTTTTAGCTTACGAGCCTTCGAGCAAACCCATCCTGAAGAGGGTTATGAGCATCTGTCAGAAAGGGCAGTTGCATATGCAGGAGGCGTTCCATTAGCTTTGAAAGTTTTGGGTTCACATTTTCATGACAGAATTACTGAATTCTGGAAATCTGAATTGAATTATTTGGAGAACCAGGAGGAATCCGTGGACAAAATGCAAAAAGTGTTACAAATGAGCTATAACAGTTTAAGAAAACGAGAGCAAACAATATTTCTGGACATTGCGTTCTTTCTAAAAGATGAAAATATTAATTTCGTCAGAAGGATACTAGATGCCTATGGTTTCAACGCTACAAGTGGAATAGAAATCCTTGAAAATAAAGCTCTTATAACTATTTCAAAAAGCAATAGGATACAAATGCATGACGTGCTACAAAAAATGGCTTTGCATATAGTTGAGGAAGAATCTAGCTTTCCAGGAAAACGTAGCCGATTGAGGAATATTGAAGAAATTCGTGATGTATTTAGAAATAACAAGGCAAGGAGCGCTGACCTTTTTTAG 1485 0.3879 MYSSPKEYDVFISFRGEDTCTDFIDHLHTALREKKIKTFIDYNLIEYNLEKGEEIGSSLIAAIQNSHISVVIFSGNYASSKWCLEELRQIHKCRKYHGQVVIPVFYKIDPSHVRGQIDSYETAFTRHEGDLDQEKVSQRRDALTETANIAGWDSRNYKDESEVIENIVNDVWKKMSLKDPKELNGLVEIDENRRNIELLLNKSPRIGIWGMEGIGKTTIAKEMFAKHFAQYDSVCFFENVREESEKLGITFVCDKILSELLKRPITTSDALGPTFIQRKLNSRLIITTRDEHTLSKMVDKIYKVSEWKFPESLQLFSLRAFEQTHPEEGYEHLSERAVAYAGGVPLALKVLGSHFHDRITEFWKSELNYLENQEESVDKMQKVLQMSYNSLRKREQTIFLDIAFFLKDENINFVRRILDAYGFNATSGIEILENKALITISKSNRIQMHDVLQKMALHIVEEESSFPGKRSRLRNIEEIRDVFRNNKARSADLF* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01953 494 FunFam Disease resistance protein (TIR-NBS-LRR class) 4 177 - -
Rops4g01953 494 PRINTS Disease resistance protein signature 205 220 - -
Rops4g01953 494 PRINTS Disease resistance protein signature 341 355 - -
Rops4g01953 494 Gene3D - 308 392 IPR042197 -
Rops4g01953 494 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 482 IPR044974 GO:0006952
Rops4g01953 494 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 152 IPR035897 -
Rops4g01953 494 Pfam TIR domain 8 184 IPR000157 GO:0007165
Rops4g01953 494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 402 IPR027417 -
Rops4g01953 494 SUPERFAMILY "Winged helix" DNA-binding domain 378 464 IPR036390 -
Rops4g01953 494 Pfam NB-ARC domain 271 389 IPR002182 GO:0043531
Rops4g01953 494 Gene3D - 172 273 IPR027417 -
Rops4g01953 494 SMART till_3 7 149 IPR000157 GO:0007165
Rops4g01953 494 Gene3D - 5 171 IPR035897 -
Rops4g01953 494 ProSiteProfiles TIR domain profile. 6 175 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01953 Rops-Chr4 45232925 45235221 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01953 2 491 WRKY Transcription Factor Family AT4G12020 29.135 3.72e-42 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01953 - - lja:Lj3g3v2666470.1 532.717