Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01946 ATGTCTTCCTTTTCCAAAAAGTACGATGTGTTCATTAGCTTTAGGGGTGAGGACACCCGCAGAGGCTTTACAAGCCATCTTCATCTTGCTCTCTGCAAGAAAAATATCAAAGCATTCATTGATGACAATCTTCATAAGGGAGATGAGGTTTGGCCTAAACTTGCCGAAGCAATCCGAAGCTCAGATATATCTATCGTCGTCTTTTCAGTAAACTATGCTTCCTCAAAGTGGTGCCTGGAAGAACTCCGTGAAATACAAAGATGCAGAAAATATCATGGACAGGTAGTTATACCTGTGTTCTACAAAATAGATCCATCCGATGTGCGTAAGCAGACCAACATTTACGAGACAGCGTTCACAAAACATGAGAGAGATCTCCAGAACAATGAATCCAGCTTAGAAAAAGTGTCTCAGTGGAGAGATGCTCTCACTGAAAGCGCCAATATATCTGGATGGGACTCTGGTAATAAGGATGAATCTGAAGTCATCGAGAACATTGTGAATGATGTTTGGAAAAAACTGTCCCTGAAGTATCCGAATGAACTAAAAGGCCTTATTGATATTGATGAAAACAAGAAATCCATGGAATTATTACTGAACAAATTTTCAAGAATTGGAATTTGGGGTATGGGGGGATCAGGAAAGACAACCATAGCCAGAGAGATGTTTGCCAAACACTTTGCTCAATATAACAGTGCATGTTTCTTAGAAAATGTAAGAGAAGAATCAAAAAGGTTCGGACTAAAAACAGTACGTGATAAGCTTCTCAGCGAGCTATGTAAGACACAGATTTCCACAGATGGACATACATTCTTGCCGTGGAGGCGAAGTGATCAAAAAGTTTTCATTGTGATTGATGATGTGGCCAACACTAAACAATTAGAAGATTTGTGTGAAGAACTGGGTGACCTTGGACCGCATAGTAGACTCATTATAACAACAAGAGATAGACACGTGATTAGTAAAATGGTTGATAAGATATACAAGGTCCCGAAATGGAATGATCCAAAATCTCTAGAGCTTTTTAGCTTAAGAGCCTTCGGGCGAAACCATCTTGAAGAGGGTTATGAGCATCTGTCAAAAAGGGCAGTTGCTTGTGCAGGAGGCGTTCCATTAGCATTAAAAGTTTTGGGCTTACATTTTCGCGGCAGAGATACTGAATTCTGGGAATCTGCATTGAGTAAATTGGAGAAGCTGGACTTGGAAGATATTCAAGAGGTGTTACGAGTGAGCTATGATGGTTTATCGAAACAAGAGCGGACAATATTTCTGGACGTTGCATTCCTTTTCAAAAATGAAGATAAAGATTTCGTCATAAGGATATTAGATGCCTGCGGTTTCAACGCTACTAGTGGAATAGAAATCCTCACGGATAAAGCTCTTATAACTATTTCAGACAGCAAAAGGATACAAATGCATGACTTGCTACAAAAAATGGCTTTGGATATAGTTGAGGAAGAATCTAAATACCCAAGAAAACGTAGCCGATTGAGGGATATTGAAAATGTTTGTGATGTACTTGAAAATAGCAATGGGACTGAAGCAGTTGAAGGCATAACATCAGATTTGTCCGGAGTAGATTTATACTTGCAAGCTAACACTTTCAACACGATGACTAATATAAGATTTCTTAGATTATATGCCCCCTTGTGTAAGCAGAGATCAGGAACTTGTGAATTTAGAGACAATTGA 1692 0.3918 MSSFSKKYDVFISFRGEDTRRGFTSHLHLALCKKNIKAFIDDNLHKGDEVWPKLAEAIRSSDISIVVFSVNYASSKWCLEELREIQRCRKYHGQVVIPVFYKIDPSDVRKQTNIYETAFTKHERDLQNNESSLEKVSQWRDALTESANISGWDSGNKDESEVIENIVNDVWKKLSLKYPNELKGLIDIDENKKSMELLLNKFSRIGIWGMGGSGKTTIAREMFAKHFAQYNSACFLENVREESKRFGLKTVRDKLLSELCKTQISTDGHTFLPWRRSDQKVFIVIDDVANTKQLEDLCEELGDLGPHSRLIITTRDRHVISKMVDKIYKVPKWNDPKSLELFSLRAFGRNHLEEGYEHLSKRAVACAGGVPLALKVLGLHFRGRDTEFWESALSKLEKLDLEDIQEVLRVSYDGLSKQERTIFLDVAFLFKNEDKDFVIRILDACGFNATSGIEILTDKALITISDSKRIQMHDLLQKMALDIVEEESKYPRKRSRLRDIENVCDVLENSNGTEAVEGITSDLSGVDLYLQANTFNTMTNIRFLRLYAPLCKQRSGTCEFRDN* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01946 563 Gene3D - 172 331 IPR027417 -
Rops4g01946 563 SUPERFAMILY "Winged helix" DNA-binding domain 403 507 IPR036390 -
Rops4g01946 563 PRINTS Disease resistance protein signature 204 219 - -
Rops4g01946 563 PRINTS Disease resistance protein signature 275 289 - -
Rops4g01946 563 PRINTS Disease resistance protein signature 367 381 - -
Rops4g01946 563 Pfam NB-ARC domain 204 412 IPR002182 GO:0043531
Rops4g01946 563 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 152 IPR035897 -
Rops4g01946 563 Pfam TIR domain 7 180 IPR000157 GO:0007165
Rops4g01946 563 Gene3D - 4 171 IPR035897 -
Rops4g01946 563 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 425 IPR027417 -
Rops4g01946 563 SMART till_3 7 149 IPR000157 GO:0007165
Rops4g01946 563 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 548 IPR044974 GO:0006952
Rops4g01946 563 Gene3D - 333 416 IPR042197 -
Rops4g01946 563 ProSiteProfiles TIR domain profile. 6 174 IPR000157 GO:0007165
Rops4g01946 563 FunFam Disease resistance protein (TIR-NBS-LRR class) 4 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01946 Rops-Chr4 45111429 45115003 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01946 3 556 WRKY Transcription Factor Family AT4G12020 30.906 6.01e-63 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01946 - - mtr:11419903 649.818