Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01944 ATGTCTCCCTCTCCCAAAAAGTACGATGTGTTCATTAGCTTCCGGGGTGAGGACACCCGCACTGGCTTCACAAGCCACCTTTACAATGCTCTCTGCAAGGAAAGTATTGAAACATTCATTGATAATAATCTTGAGAGGGGAGATGAAGTTTGGCCCAAAATTGCCGAAGCAATCCAGGGATCACATATATCTCTCGTTGTTTTCTCAGTAAAATATGCTTCCTCAAAGTGGTGCTTGGAAGAACTCCGCGAAATACTCGAATGCAGAAAAAATCGCGGACAGGTAGTAATACCTGTGTTCTACAAAATAGATCCATCACACATACGCAAGCAGACCGGGAGTTACCAGAAAGCATTTGAAAAACATGAGAGAGATGCCGGGAACAATCAATTCGACCAACAAAAAGTGTCTCAGTGGAGAGCTGCTCTCACTGAAGCCGCCAATATATCTGGATGGGACTCTAGTAACTACAGGGATGATTATCAATTCACCAAGAGCATTGTGAAAGATGTTTTGCAAAAGCATAGCATGATGTATCCTCATGAACTGAAAGGCCTTGTTGACATTGATGAAAACAAGCAATGCATGGAATTAATACTGTATATGTATCAAAGAATTGGAATTTGGGGCATGGGGGGACTAGGAAAGACAACCATAGCCAGAGAGATGTTTGCCAAACACTTTGCACAATATGACGTTGTATGCTTCTTGGAAAATGTAAGAGGACAAACAGAGAAGTCCGGATTCGACTCCGTACGTGAAAAGCTTTTCAGTGAACTACTAAAGAGAGAAATTACCTCATCTGATGTTCATAGACCCACATTGATTCAGAGGAGGCTCAGTAGTAAAAAAGTTTTCATTGTACTTGACGATGTGGATGATGCTACAGAATTAGAACAATTGTGTGGAGTACTCAGTGACCATAGACCAGATAGTAGACTCATTATAACAACAAGAGATAGGCATATGCTTCGTACAAGAGTTGACCAGATATACGAGGTCAAGAAATGGAAAGTTGCAGAATCTCTTAAACTTTTTAGCTTGGGAGCCTTCGAGCAAAGCCATCCTAAGGAGGGTTATGAACGTCTCTCAAAAAGGGCAGTGGCATATGCAGGAGGCATTCCATTAGCTTTAAAAGTTTTGGGTTTACATTTTCGTAAGAAGAGTATTGAATTCTGTGAATCCGAACTGAAATATTTGGAGAACAAGGAGGAATCTTGGGACGAAATTCAAAAAGTGTTACGAGTGAGCTATAATAGTTTAACACAACGAGAGCGGGCAATATTTCTGGACATTGCATTCTTTTTCAAAGACGAAAATATAGATTTCGTCATAAGGATACTAGATGCATATGAATGTAATTTTAACTCTAGTAGCGGAATCGAAATCCTTGAAGATAAAGCTCTTATAAGTATTTCAAATAGCAAGAGGATACAAATGAATGACTTGCTACAAAAAATGGCTTTGGATATAGTTGGGAAAGAATCTAGCCTACCAGGAGAACGAAGCCGATTGAGGAATATTGAAGAAGTTCGTGATGTACTTAGAAATAGCAAGGGAACTGATGCAGTTGAAGGCATTACATTTGATTTGTCTCAAAAAGTAGATCTACACTTGCAAGCTGACACATTAAACGTGATGACTAAATTAAGATTTCTTAGATTATATGTCCCCTTGGGTAAGAAGAGATCCGCTGAAGTTTACCATCATGGATTCCTTAAGCCATGTTCGGATGAATTGAGGTACCTTGAGTGGAATGGATACCCCTTGGAGTCTCTTCCACCAAATTTTTGTGCTGAGTTTCTTGTTGAGATTCGCATGCCACACAGTCATATTCAAGAACTTTGGCAAGATACACAGGATCTTCGGAATTTAGAGACAATTGACCTAAGTGAATGCAAGCAGTTTATGAAGCTCCCTGATTTGTCTAGGGCATTAAAACTTAAATGGGTGTCTCTCTCCGGATGTGAAAGTTTGTGTGCTATTCATCCATCCCTTTTATGTGTGGATACACTTGAAACTTTGTTACTGAATGGGTGCAAAAAACTGGAGAGTCTTAAGAGTGGAAAACATTTTAGCGGTCTACAGAAGCTCGATGTCGATGACTGTTCAAGCCTTTTGGATTTTTCAATATCGTCGGATTCAATTGAAAGGTTGGATTTAAGCAAGACGGGAGTCCAAAAATTGGACCGATCAATCGGTCTTCAAAACAGGCTTTTGTGGCTCAGTCTAGGAGGATTAAGCCTACAGAATTTTCCAGATGAGTTATCGTGGCTGCACTCTCTTGAGGAGTTTAGGATATCTAAATGCGAACCAGTTAACAAAGAGAAGCTACATGTCCTATGTGATGGATTACGATCCTTAAAAGTACTGCATTTGAAGGATTGTTTTAATTTGCTTGAACTCCCCGACAACGTCAACGCCTTGTCGTCATTACAGGAATTAAGGCTCGACGGAAGCAGTGTTGAGAAGTTGCCTGCAAGCATCAAGCTTCTTGAAAATCTGGAGACTTTGTCCTTAGAGAATTGTTGGCACCTTCAATCCCTACCTAAGCTCCCACCGTTCATCAAAGAGCTTTATGCCATGAATTGTATCTCATTAGTGACTGTATCCACTTTAAAGACTTTTTCAGTCCAGATGAAAGGAAAAGAGAAACATATCAATTTTAAGAATGGAATGAAATTGAATGATTTGTCACTCCTCCAGATTATGGAAGACGTCCATTTCACAATGAAGAGTGCTGCGTTGCACAATGTATTGGTAAGAAGGTTCAATCTGGATACCCACAGCCATAATTATAACAGTGTTGGGGTTTGTTTACCAGGAAGTAGTGTCCCAGAGTGGTTCATATATCAAACCACTAAGTCCTCTGTTATCATTGAACTTCCTGATCCTGACCAATGTTCTCACTTGCTAGGTTTAATTTACTGTGCGGTTCTTTCTCCATCCAGTGTAATGCAGCAGAGTGAAGTCCGTTTTTTGATAAATGGTAGTGAGTGTGGATACACAGAAACATGGCATCACGACATCACCGGGGAATTGGATTCGGATCATGTTTTTGTATGGTATGATCCATTCCATTGTGATCCAATTCTCAACCGTTTTGAACGAAATAAACGTTTTGAGTTAGGTATTAAAGCTGAGGGAGGGGAAAATGATGACCCAGTCCAGATTAAAGAGTTTGGGGTCCACATAATATGTGGCTCAGATTTAGAGCTTCACAGTCTCTTGCGAGAAGCAGCAAACTTGGAATTTGAGTTGAAGTCGCAATTGGGATTGAAGTTTTTATTGGCGTGGGACTGGCTGAATGGATCTAATCGGGAATTAACAGCGGTGTTATGCCTTGCATTGGAGAATGGATACGAATTGGATGAACCATTGAAATCAGAGTTAGAATCGCAATGTCAAGCAGTTCTAACGTTAATGGAGAAGGAAAGTAGTGGCGAAGGAACCCAGATATCGAATAAAGAACAAAAGTTGAGTGATCGCATCCTTGAATCAAACTCAGAGATGGTCATACCAGATTCAGTTGAAGAAGGTAATGGGATGAAAGACCATTATTCTGATATGAAAGAAGGCATCGAATCTTCAAGCAAGGAAATCAAGACTAGTGCTGAAGGAGGTCACGGGCAAATTATTATCACAGAGCCTACAAATACAGTCAACAGCAAAGGAAACGAAGGAACGACAACTGAACTTGATGCTGGATTGCATGTAGTGTCAGTTGATGAAGAAAATGCTTTGAAGGACAAGTCAAATGAAGACAATTACTATTGGCCCAATAATATTGAAGAGACCAAGCATTCAGAAGAAAATCCAAATCCACAAGGAGGACAAGTCAATGTCCCTCTCACCAATGATCTAATTATCAAAGAACCAGACGATGAAAAAGAAAATGAGCCAGTGGATCTTGGCAAACATGAAGGTGAAGATGAATCAGATGAGAATCCCTTTGCTGAACTTGAGAGCATCCTGTTGGGAAGTCCAAAATCATCGGCTGAAGAAACCTGTTCTACAAGCGATGTCACTATACAAGAAGCTTTGCCCAAACTTGAATGCCTATTGGAAAACTCACTTGAGTCCATTCTGGGTAACGTGGAACTACAGCAACAATTGCTAATATCTTTGAAATGCATACAACGGGCATCCAAGGAAAATGTTTCTCCTAATGTTGCGAAGCTTGTTGAAAGCATGACATCCTCTATTGAGGATCTGTTCAAAGATTTTCTCTGGACTCAAAAAGTAGTCCATGATTACACTAGCCTTTTGGAACAAAAAGAAAAGCTTATACAGCAAATGAGCGATGCTAAGAAACGGAAAGAACTGGTGGAAAAAGAAAAGAGTCAATGTGAGGCTGAAACCGAACATCTCGACCAAGAGGCTAAAAAGCTGGATGAAAAAAATCAACTTGTTGAACGAAATAAAATGATAGAGTTGGAAGAAACCAAGTTGAAGGAGACCATGGAAAGATGTGACCGTGAAAAGAAGAATCTGGAAGATGAGGCTAAGAGTATGATAACAGAAAGCAAAGAGCTAAAGTCGGTGACTAAGGTTTCTGAATCCTCATATGATGCTGCCCTGTCAAAGCAGGACAAGTTGAATGACAAATGGGAAGGTTTCAGAACAGCTTTTGCAGATAAGAGAGGAAGTAGATGA 4656 0.4014 MSPSPKKYDVFISFRGEDTRTGFTSHLYNALCKESIETFIDNNLERGDEVWPKIAEAIQGSHISLVVFSVKYASSKWCLEELREILECRKNRGQVVIPVFYKIDPSHIRKQTGSYQKAFEKHERDAGNNQFDQQKVSQWRAALTEAANISGWDSSNYRDDYQFTKSIVKDVLQKHSMMYPHELKGLVDIDENKQCMELILYMYQRIGIWGMGGLGKTTIAREMFAKHFAQYDVVCFLENVRGQTEKSGFDSVREKLFSELLKREITSSDVHRPTLIQRRLSSKKVFIVLDDVDDATELEQLCGVLSDHRPDSRLIITTRDRHMLRTRVDQIYEVKKWKVAESLKLFSLGAFEQSHPKEGYERLSKRAVAYAGGIPLALKVLGLHFRKKSIEFCESELKYLENKEESWDEIQKVLRVSYNSLTQRERAIFLDIAFFFKDENIDFVIRILDAYECNFNSSSGIEILEDKALISISNSKRIQMNDLLQKMALDIVGKESSLPGERSRLRNIEEVRDVLRNSKGTDAVEGITFDLSQKVDLHLQADTLNVMTKLRFLRLYVPLGKKRSAEVYHHGFLKPCSDELRYLEWNGYPLESLPPNFCAEFLVEIRMPHSHIQELWQDTQDLRNLETIDLSECKQFMKLPDLSRALKLKWVSLSGCESLCAIHPSLLCVDTLETLLLNGCKKLESLKSGKHFSGLQKLDVDDCSSLLDFSISSDSIERLDLSKTGVQKLDRSIGLQNRLLWLSLGGLSLQNFPDELSWLHSLEEFRISKCEPVNKEKLHVLCDGLRSLKVLHLKDCFNLLELPDNVNALSSLQELRLDGSSVEKLPASIKLLENLETLSLENCWHLQSLPKLPPFIKELYAMNCISLVTVSTLKTFSVQMKGKEKHINFKNGMKLNDLSLLQIMEDVHFTMKSAALHNVLVRRFNLDTHSHNYNSVGVCLPGSSVPEWFIYQTTKSSVIIELPDPDQCSHLLGLIYCAVLSPSSVMQQSEVRFLINGSECGYTETWHHDITGELDSDHVFVWYDPFHCDPILNRFERNKRFELGIKAEGGENDDPVQIKEFGVHIICGSDLELHSLLREAANLEFELKSQLGLKFLLAWDWLNGSNRELTAVLCLALENGYELDEPLKSELESQCQAVLTLMEKESSGEGTQISNKEQKLSDRILESNSEMVIPDSVEEGNGMKDHYSDMKEGIESSSKEIKTSAEGGHGQIIITEPTNTVNSKGNEGTTTELDAGLHVVSVDEENALKDKSNEDNYYWPNNIEETKHSEENPNPQGGQVNVPLTNDLIIKEPDDEKENEPVDLGKHEGEDESDENPFAELESILLGSPKSSAEETCSTSDVTIQEALPKLECLLENSLESILGNVELQQQLLISLKCIQRASKENVSPNVAKLVESMTSSIEDLFKDFLWTQKVVHDYTSLLEQKEKLIQQMSDAKKRKELVEKEKSQCEAETEHLDQEAKKLDEKNQLVERNKMIELEETKLKETMERCDREKKNLEDEAKSMITESKELKSVTKVSESSYDAALSKQDKLNDKWEGFRTAFADKRGSR* 1552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01944 1551 PRINTS Disease resistance protein signature 620 636 - -
Rops4g01944 1551 PRINTS Disease resistance protein signature 279 293 - -
Rops4g01944 1551 PRINTS Disease resistance protein signature 371 385 - -
Rops4g01944 1551 PRINTS Disease resistance protein signature 205 220 - -
Rops4g01944 1551 SUPERFAMILY L domain-like 529 868 - -
Rops4g01944 1551 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 432 IPR027417 -
Rops4g01944 1551 Gene3D - 178 334 IPR027417 -
Rops4g01944 1551 MobiDBLite consensus disorder prediction 1292 1313 - -
Rops4g01944 1551 Gene3D - 338 422 IPR042197 -
Rops4g01944 1551 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 709 IPR044974 GO:0006952
Rops4g01944 1551 SUPERFAMILY "Winged helix" DNA-binding domain 408 498 IPR036390 -
Rops4g01944 1551 Coils Coil 1477 1515 - -
Rops4g01944 1551 MobiDBLite consensus disorder prediction 1292 1316 - -
Rops4g01944 1551 Pfam C-JID domain 940 1070 IPR045344 -
Rops4g01944 1551 Pfam Leucine Rich Repeat 601 620 IPR011713 -
Rops4g01944 1551 SMART till_3 7 149 IPR000157 GO:0007165
Rops4g01944 1551 Gene3D Ribonuclease Inhibitor 714 905 IPR032675 -
Rops4g01944 1551 Gene3D Ribonuclease Inhibitor 527 712 IPR032675 -
Rops4g01944 1551 Coils Coil 1419 1474 - -
Rops4g01944 1551 FunFam Disease resistance protein (TIR-NBS-LRR class) 4 177 - -
Rops4g01944 1551 ProSiteProfiles TIR domain profile. 6 175 IPR000157 GO:0007165
Rops4g01944 1551 Pfam TIR domain 7 181 IPR000157 GO:0007165
Rops4g01944 1551 Gene3D - 5 177 IPR035897 -
Rops4g01944 1551 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 152 IPR035897 -
Rops4g01944 1551 Pfam NB-ARC domain 206 419 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01944 Rops-Chr4 45041912 45051280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01944 785 867 WRKY Transcription Factor Family AT4G12020 39.535 2.97e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01944 - - cam:101515491 1269.6