Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01943 ATGGATAGTCGGAATATGTCTCCCTCTCCCAAAAAGTCTGATGTGTTCATTAGCTTCAGGGGTGAGGACACCCGTACTGGCTTCACAAGCCATCTTCATACTGCTCTCTGCAAGGCAAACATCGAAACATACATTGATAATAACCTTAAGAAGAGAGATGAGATTTGGTCAGCACTTGTCGAAGCAATCCATAGCTCACATATATCTCTCGTCGTTTTCTCAGAAAACAATGCTTCCTCAAAGTGGTGCTTGAAAGAACTGAAAAAAATAATCGAATGCGGAAAAAATCATAGACAGGTAGTTATACCTGTGTTCTACAAAATAGATCCCTCACATGTACGTAAGCAGACAGGGAATTATGAGAAAGCATTTGCAAAACATGAGAGTGATCTCATGAACGATAAATCCAACTTAGAAAAAGTGTCTCAGTGGAGAGATGCTCTCGCTGAAGCAGCCAATATATCTGGATGGGACTCTAATGAGCATAGGGATGATTCTCAAGTTATCGAGAACATTGTGAATGATGTTACAGAGAAGCTGTCCCAGAAGCATCCTGATGAATTGAAAGGCTTTGTTGAAAAATATTTGTGTGGAGAACTCGGTGACCTTGGACCACATAGTAGACTCATTATAACATCAAGAGACAAGCATACACTTATTTCTAGAGTTGATGAGATATACGAGGTCCAGGAATGGAAGTTTCCAGAATCTCTAAAGCTTTTTGGCTTAGGAGCCTTCAAGCAAACCCATCCAAAATTGGGTTATGAACATCTCTCTGAAAGGGCAGTTGCATATGCAAGAGGCGTGCCATTAGCTTTAAAAGTTTTAGGGTTGCATTTTCGTTCCAGAAATATTGAATTCTGGGAATCTGAATTGAGTTATTTGGATAACAAGGAGAAATCCTGGGACAATATTCAAAAAGTGTTACGAGTGTGCTATGATGGTTTATCAACACAAGAGCGGGCAATATTTATGGATATTGCATTCTTTTTCACAGAGGAAGATAAAGATTTCGTTGTAAGAATACTAAATGCGTGTGGTTTCGACGCTACTCGTGGAATAGAAGTCCTCAAAGATAAAGCTCTTGTAACTATTTCCAATAGCAATAAGATTTCAAATGCATGTCTTGCTGCAAGAAATGGGGTTCTTAGATTTTACGTCCCCCCAGGTGAGAAGAGATCAGGTACTGTGTACCATCCTGGATTCCATAACAGATGTTTTGATGAAATCAAGTACCTTGAGTGGAATGGATACCCTTTGAGGTCTCTTCCACCGCAATTTTGTGCTAAGTTTCTTGTTGAGATTCACATGCCACACAGTCATATTGAAGAACTTTGGCAGGGGATGCAGGATCTCATGAATTTAGAGACAATTGACCTAAGTGAATGCAAGCAGTTGATGGAGCTCCCTGATTTGTCTAGGGCGTCAAAACTTAAATGGGTGTATCTCTCCGGATGTGAAAGTTTATGTGTTGTTCATCCATCTCTTTTATCTTTGGATACACTTGAAACTTTGATACTGAACGGGTGCCAAAAAATCAAGAGTCTTATAAGTGAAAGAACTATAAACAGTCTAAAGAAGCTCAATGTCAGTGACTGTTCAAGCCTTGAGGAATTTTCAGTGTCATCCTATTCAATTGAAATGTTGGATTTAAGCATGACGGGAGTAAAAAAACTGAACTCGTCAATCGGTAGTCTTAGCAAGCTTAAGAGCCTCAAACTAGAAGGATATAGCCTATATAATCTTCCAGATGAGTTGTCGTACCTGACATCTCTTCAGGAGCTCGGGATTTCTAACTGCAGAGTAGTTAACAAAGAGAAGCTACATGTCCTATGTGACGGCTTATTTTCCTTAAAATTACTATATTTGAAGGATTGTTATGAGTTGTTTGAACTCCCTGACAACATCAATGACTTATCTTCATTATATGAATTAAGGCTTGACGGAAGTAATGTTGAAAAGTTGCCTGCAAGCATCAAGTTTCTTGAAAATCTTGAGATTCTGTCCTTAGACAATTGTAGGAAGCTTCAGTCTTTACCTGAGCTTCCACCGTTAATTAAAGAGCTTGATGCTGTCAACTGTACCTCATTAATGACAGTATCCACTATAAAGACGTTTTCAATCCAGATGAAAGGAAAGGAGAAACACATTTCCTTTAAGAATGGAATGAAACTGAATGAACGTTCTCTCCTTCGGATTATGGAAGATGCCTTGTTCACAATGAAGAGTGCTACATTGCACAATGTATTTGTAAAAAGGTTTAGTGTGGATACCCATAGCTATATTTATAACAGTGTTCGGGTTTGTTTACCAGGAAGTAGCGTCCCAGAGCAGTTAGCATATCGAACCACAGAGTCCTCCATCATCATTAAACTTCCCAGTGACCAATGTTCCCACTTGATAGGCTTCATTTACTCTGTGGTTCTTTCTCCATTCCGTGTATACAATGGGGCTGCCTCTTGTGAAGGAAATAGATTTGAGTTTAGTGTTACGACTGACAGTGGGGAAGGTGAAGGCTTGATTCATATGAAAGAGTTTGGGGTCCACCCAATATATGTCTCAAATTCAGAGCTTCCCAGTTTTTTGCGGGAAGCAACAAACTTGAAATTGAAGACAAAGTTGGAGCTGGGATTGAAGTTCTTATTGGCGGCGGGCTTGCAACAAGGATATAATCGGGAAGTAACGTGGAAATTATGTCTTGCATTGAAGAATGGATATGAATCGGATGAATCATTGAAATATGAGTTAGAATCACGACATCGAGCAGTTTTAACCTTAATTGAGAAGGAAATCAATGGCATGAGGACCTAG 2811 0.3942 MDSRNMSPSPKKSDVFISFRGEDTRTGFTSHLHTALCKANIETYIDNNLKKRDEIWSALVEAIHSSHISLVVFSENNASSKWCLKELKKIIECGKNHRQVVIPVFYKIDPSHVRKQTGNYEKAFAKHESDLMNDKSNLEKVSQWRDALAEAANISGWDSNEHRDDSQVIENIVNDVTEKLSQKHPDELKGFVEKYLCGELGDLGPHSRLIITSRDKHTLISRVDEIYEVQEWKFPESLKLFGLGAFKQTHPKLGYEHLSERAVAYARGVPLALKVLGLHFRSRNIEFWESELSYLDNKEKSWDNIQKVLRVCYDGLSTQERAIFMDIAFFFTEEDKDFVVRILNACGFDATRGIEVLKDKALVTISNSNKISNACLAARNGVLRFYVPPGEKRSGTVYHPGFHNRCFDEIKYLEWNGYPLRSLPPQFCAKFLVEIHMPHSHIEELWQGMQDLMNLETIDLSECKQLMELPDLSRASKLKWVYLSGCESLCVVHPSLLSLDTLETLILNGCQKIKSLISERTINSLKKLNVSDCSSLEEFSVSSYSIEMLDLSMTGVKKLNSSIGSLSKLKSLKLEGYSLYNLPDELSYLTSLQELGISNCRVVNKEKLHVLCDGLFSLKLLYLKDCYELFELPDNINDLSSLYELRLDGSNVEKLPASIKFLENLEILSLDNCRKLQSLPELPPLIKELDAVNCTSLMTVSTIKTFSIQMKGKEKHISFKNGMKLNERSLLRIMEDALFTMKSATLHNVFVKRFSVDTHSYIYNSVRVCLPGSSVPEQLAYRTTESSIIIKLPSDQCSHLIGFIYSVVLSPFRVYNGAASCEGNRFEFSVTTDSGEGEGLIHMKEFGVHPIYVSNSELPSFLREATNLKLKTKLELGLKFLLAAGLQQGYNREVTWKLCLALKNGYESDESLKYELESRHRAVLTLIEKEINGMRT* 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01943 936 Gene3D Ribonuclease Inhibitor 545 724 IPR032675 -
Rops4g01943 936 PRINTS Disease resistance protein signature 450 466 - -
Rops4g01943 936 PRINTS Disease resistance protein signature 266 280 - -
Rops4g01943 936 FunFam Disease resistance protein (TIR-NBS-LRR class) 9 182 - -
Rops4g01943 936 SUPERFAMILY L domain-like 404 696 - -
Rops4g01943 936 Gene3D - 8 186 IPR035897 -
Rops4g01943 936 Gene3D Ribonuclease Inhibitor 365 542 IPR032675 -
Rops4g01943 936 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 327 IPR027417 -
Rops4g01943 936 Pfam TIR domain 14 186 IPR000157 GO:0007165
Rops4g01943 936 Gene3D - 234 317 IPR042197 -
Rops4g01943 936 SMART till_3 12 154 IPR000157 GO:0007165
Rops4g01943 936 ProSiteProfiles TIR domain profile. 11 180 IPR000157 GO:0007165
Rops4g01943 936 Pfam Leucine Rich Repeat 431 448 IPR011713 -
Rops4g01943 936 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 549 698 IPR044974 GO:0006952
Rops4g01943 936 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 157 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01943 Rops-Chr4 44977478 44986945 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01943 192 704 WRKY Transcription Factor Family AT4G12020 26.370 3.90e-29 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01943 - - lja:Lj0g3v0283809.3 697.582