Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01942 ATGATGTCTTCTTCTGCCAAAAAGCACGATGTATTTCTTAGCTTCCGAGGTGAGGACACCCGCCTCGGCTTCATCAGTCATCTTTATGATGCTCTGAATCAGAAATCAATCAAAACATACATAGACAACCAGCTCAATAGAGGAGCTGATATTTGGCCATCACTGGTCAACGCAATCGAGGACTCCCATGTATCCATTGTTGTTTTCTCAGAAAATTATGCAAACTCGAAATGGTGTTTGGAAGAACTCGTTAAAATACTTGATTGCAGAAGAGATCAGGGTCAGGTTGTTATACCTGTTTTCTATAAAACAGATCCGTCAGATGTAAGGAAGCAAACTGGCAGTTACGAGAAAGCATTCGCCAAACATGAGCGAGATCTTGGTGAGAAAGACAGCGAATCCAAACAGAAAGTGTTGAAGTGGAAAGCTGCCCTCAATGAAGCAGCCAATATATCTGGATGGGGCTCTGGAACCCATAAGGAGGAATCTCACCTTATCGAGAAAATAATCAATGATGTATTGCAAAAGCTACATCTGAGGTACCCAACTGAACTGAAAGGTCTTGTTGGAACTGAAAGAAACTGTAAGGAAGTGGAATTATTAATGAAAAAAGTTCGAGTAATTGGAATCTGGGGCATGAGTGGAGTAGGTAAGTCAACCATTGCTAAAGTCTTGTTTGCCAAACTCTTTACCCAATATGATAATGTCTGCCTCGTGGCCAATGCAAAAGAATATTCACATGATAAGCTTCTCTTTGAGCTATTGAAGGAAGAAATTCCCAGATCTCTCATAGGATCCACATTCCATACGAGGAGGCTCGCTAGTAAAAAGGTTTTCGTTGTACTTGATAACGTGGATAGTTTGGATCAAATAGAATATTTGTGCAGAGAGTACCGTGACCTTCGTCACGATAGTAGACTCGTCATAACAACAAGAGATAAGCAATTGCTTATTGGAAGAGTCGATTATATATACGAGGTCAAGAAATGGAAAACTGCAGAATCTTTAAAGCTTTTTAGCTTAGAAGCCTTCAAGCAAAACCATCCCCAGAAAGGTTACGAGGATCTCTCACAGAAGGCAGTTGATTATGCAGGGGGCCTTCCATTAGCTCTTAAAGTTTTGGGTTCAAATCTTCGCTTGAAAAGTGCTGACTTTTGGAAAAGTACTTTCAGAAAACTCAACAAGTATCCCGATCAGAAAATTCAAAAATTGTTAGAAGTTAGCTACGAAGAATTGGATCCTCTAGAGCAGAAGATACTTCTAGACATTGCATTTTTTTTCAAAGGAAAAAAGAAAGATCAGGTCATAAGGATACTAGATGCCTGTGGTTTCGAAGCAAGTAGTGGAATAGAAGTCCTTAAAGACAAAGCTTTGATAACTATCTCGAACAGCAATAGAATACAGATTCATGACTTACTTCAAAAAATGGGTTTGGAAATAGTACGTAAAAAATGTAGCACAAACCCTGGAAGACGGACCCGATTGAGGGATAATGAAGCTCGTGAAGTAATTGAAGAAAACAAGGAACTTCATAATTTAGAGGTAATTGACCTAAGTGAATGCAAACAGTTTGTAAGGCTTCCGGATTTGTCCAAGGCGTCAAGACTTACATGGGTTGATCTCTCTGGATGTGAAAGTCTGCGGCGTCTTCATCCATCTGTTTTATCCTCTGACACGCTTGTTACTTTGATACTGGACAGGTGTACAAATCTTAGGAACGTTAAAGGTCAGAAGCATTTAGAATCTCTGGAGAAGATTACTGTCAATGGCTGCTTAAATCTCGAGGAATTTGCAGTGTCCTCGGATTTGATTGAAAACTTGGATTTAAGCAGTACAAGAATCCAAACATTAGACACATCAATTGGGAGTCTACACAATCTTAAGTGGCTTAATCTAGAGGGTTTAAGACTCAGGTATCTTCTAAAGGAATTATCTTACCTGAAATCCCTCAAGGAACTGAAGCTTTCTGGCAGTGGACTAGTGACTGACAAACAACAGCTATATATCTTGTTTGATGGCTTACGATCCCTACAAATACTACATTTGAAGAGTTTTAGTAACTTGTTGGAACTCCCCGACAACATCAGCTTCCTATCACAATTACAGGAATTAAGGCTAGATGGAAGCAATGTGAATAGCTTGCCCGAAAGCATCAAGCATCTTCAAGAGCTGGAAATTCTGTCCTTGGAGAATTGCAGGGAGCTTCTGTTCCTGTCAGAGCTTCCACCCTTCATCAAACTGTTATGCGCCATTAACTGCACGTCATTAGAATCAGTGCCAAATTTAAAGACTTTGGCAAATAAGATGATGGGAAAAGCCAAACACATCTCATTCAAGAATAGCTTGAATTTGGACAGGGATTCACTCTATGGTATTATGAAAAGCCTCCATTTAACAATGGTGAGTGCTGCAATTGACAATGTGTTAGTAAGAAGACTCCGTGCGGGCTACAACTATACCAGTATTGAGGTTTGTCTACCAAGTAGAAGGGTGCCAGAGCAGGTCAAATATCGAACAAATGAGTCCTCTATTACCATTAAACTTCCTAACCGTTCCAACTTGTTGGGCTTCATTTACTACGTGCTTCTATCTCCAGCAGGTGGAATGAAGAAGCATGGCACTAAAATAAAATGTCAATGCCGCTTGAAAGAAGGTACAAGGGCTACATGGCTAAGTACTGATATCACGGAACTGAACTCGGATCATGTTTGTGTATGGTATGATCCATTCCATTGTGACAGCATTCTCAAATTTTATGAACCAAAGGTTTGTTTTGAATTCTGTGTTGCAAATGATGCGGGGGAAGTTGATGGTTCAATCTGTATTAAAGAGTGTGGGGTACGCCTCGTAAGTGTTTCAGAATCCTACAGGGTTTTATCGGAATTGGACTTGGATTCGGATAAGAAAAAGGTCTTGGAGATGGGAGTGGAGTTGGAAAGCAATGATATAAGAAACCAGATACAGAATCAACAACGGGACTCGAATGAACAGAGTTCCAGTGCTAGTATGGACGAATCATACTCAGTGATTGCCAAAACAGATTCAGGTGAAGAAGGTAATGGGAGGAAAGACCATTATTCTGAGGGCATCAAATCCACTAGCAAGGAAACAAAGACTGGTGCTGAGAGAGGTTGCGGGCAGATCAGTATCACAACCTCTACAAATGTGACTCGCAAGTGTAGACTCTGA 3189 0.4042 MMSSSAKKHDVFLSFRGEDTRLGFISHLYDALNQKSIKTYIDNQLNRGADIWPSLVNAIEDSHVSIVVFSENYANSKWCLEELVKILDCRRDQGQVVIPVFYKTDPSDVRKQTGSYEKAFAKHERDLGEKDSESKQKVLKWKAALNEAANISGWGSGTHKEESHLIEKIINDVLQKLHLRYPTELKGLVGTERNCKEVELLMKKVRVIGIWGMSGVGKSTIAKVLFAKLFTQYDNVCLVANAKEYSHDKLLFELLKEEIPRSLIGSTFHTRRLASKKVFVVLDNVDSLDQIEYLCREYRDLRHDSRLVITTRDKQLLIGRVDYIYEVKKWKTAESLKLFSLEAFKQNHPQKGYEDLSQKAVDYAGGLPLALKVLGSNLRLKSADFWKSTFRKLNKYPDQKIQKLLEVSYEELDPLEQKILLDIAFFFKGKKKDQVIRILDACGFEASSGIEVLKDKALITISNSNRIQIHDLLQKMGLEIVRKKCSTNPGRRTRLRDNEAREVIEENKELHNLEVIDLSECKQFVRLPDLSKASRLTWVDLSGCESLRRLHPSVLSSDTLVTLILDRCTNLRNVKGQKHLESLEKITVNGCLNLEEFAVSSDLIENLDLSSTRIQTLDTSIGSLHNLKWLNLEGLRLRYLLKELSYLKSLKELKLSGSGLVTDKQQLYILFDGLRSLQILHLKSFSNLLELPDNISFLSQLQELRLDGSNVNSLPESIKHLQELEILSLENCRELLFLSELPPFIKLLCAINCTSLESVPNLKTLANKMMGKAKHISFKNSLNLDRDSLYGIMKSLHLTMVSAAIDNVLVRRLRAGYNYTSIEVCLPSRRVPEQVKYRTNESSITIKLPNRSNLLGFIYYVLLSPAGGMKKHGTKIKCQCRLKEGTRATWLSTDITELNSDHVCVWYDPFHCDSILKFYEPKVCFEFCVANDAGEVDGSICIKECGVRLVSVSESYRVLSELDLDSDKKKVLEMGVELESNDIRNQIQNQQRDSNEQSSSASMDESYSVIAKTDSGEEGNGRKDHYSEGIKSTSKETKTGAERGCGQISITTSTNVTRKCRL* 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01942 1062 Gene3D Ribonuclease Inhibitor 604 782 IPR032675 -
Rops4g01942 1062 Gene3D Ribonuclease Inhibitor 491 603 IPR032675 -
Rops4g01942 1062 Gene3D - 5 177 IPR035897 -
Rops4g01942 1062 ProSiteProfiles TIR domain profile. 7 177 IPR000157 GO:0007165
Rops4g01942 1062 MobiDBLite consensus disorder prediction 982 1009 - -
Rops4g01942 1062 SMART till_3 8 151 IPR000157 GO:0007165
Rops4g01942 1062 MobiDBLite consensus disorder prediction 982 1044 - -
Rops4g01942 1062 Gene3D - 331 413 IPR042197 -
Rops4g01942 1062 Pfam TIR domain 8 183 IPR000157 GO:0007165
Rops4g01942 1062 FunFam Disease resistance protein (TIR-NBS-LRR class) 5 179 - -
Rops4g01942 1062 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 597 IPR044974 GO:0006952
Rops4g01942 1062 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 154 IPR035897 -
Rops4g01942 1062 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 423 IPR027417 -
Rops4g01942 1062 SUPERFAMILY L domain-like 495 763 - -
Rops4g01942 1062 PRINTS Disease resistance protein signature 508 524 - -
Rops4g01942 1062 PRINTS Disease resistance protein signature 207 222 - -
Rops4g01942 1062 PRINTS Disease resistance protein signature 272 286 - -
Rops4g01942 1062 PRINTS Disease resistance protein signature 364 378 - -
Rops4g01942 1062 Pfam NB-ARC domain 202 413 IPR002182 GO:0043531
Rops4g01942 1062 SUPERFAMILY "Winged helix" DNA-binding domain 400 485 IPR036390 -
Rops4g01942 1062 Gene3D - 178 321 IPR027417 -
Rops4g01942 1062 MobiDBLite consensus disorder prediction 1016 1038 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01942 Rops-Chr4 44951751 44975588 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01942 4 761 WRKY Transcription Factor Family AT4G12020 29.012 1.28e-56 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01942 - - vun:114165831 1050.43