Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01940 ATGTCTACCTCTTCCAAAAGCCACGATGTATTCCTCAGCTTTAGAGGTGAGGACACCAGAGCCAACTTCGCAATCAATCTTTATCATACTCTCTGCAAGAAAAACATCCAAACATACATTGATTATAATATTGAAAAGGGTGATGACGTTTGGCCCGCACTTGCAAAAGCAATCCAGGATTCAGATATCATCGTTTTCTCAGAAAACTATGCTTCCTCTAAGTGGTGCTTGGATGAACTCCTTGAAATACTCAAATGCAGAAAAAATCATAGACAGGTAGTTATACCTGTGTTCTACAAAACTGATCCATCAGATATACGTCACCAGAGAGGCAGTTACAAGAAAGCATTCGCAAAATATAAGAGAGAACTCAAGAACAATAAAAACTATGAAGACAAAGTGTCCAAGTGGAGAGATGCTCTAACTGAAGCGGCCGATCTATGTGGATGGGACTCCGGTAAATTTAGGGATGATTATGAACTTATCGAGAACATTGTGAAAGATGTTTGGCAGAAGCAGTCCCTGAAGTATCCTCATGAACTGAAAGGCCTTGTTGAAATTGATAAAAACAGGAAAGACGTCGAATCATTCTTGAATGAATTTCCAAGAATTGGGATTTGGGGCATGGGTGGACTGGGAAAGACGACCATAGCTAGAGAGATGTTTGCCAAATACTTTGCACAATATGACAGTGTGTGCTTCTTGGAAAAAGTAAGGGAAGAATCAGAAAAGTTGGGACTAACATCTGTACGTAATAAGCTTTTCAGTGAGCTACTAAAGGAACAAATTACTACATCTGATGTTCTTGGACACACATTCATCCAGAGGAGGCTCGGTAGCAAAAACGTTTTCATTGTACTAGATGATGTGAAAAATGCTACACAACTAGAATATCTATTTGAAGAACTCGGTGACCTTGGACCAGGTAGTAAACTCATTATAACAACAAGAGACAGGCATGCACTTAGTACAAGAGTTGATAAAATATACAATGTCACTAAATGGGAGTTTCCAGAATCTCTAGAGCTTTTTAGCTTAAGAGCCTTCCAACAAACCCATCCTAAAGAGGGTTATGAACGTCTCTCGGAAAGGGCAGTTGCATATGCGGGAGGCGTTCCATTAGCTTTGAAAGTTTTGGGTTTACATCTTCGTGGCAGAAATGCTGAATTCTGGAAATCTCAATTGGATTATTTGGAGAACAAGGAGGAATTCTTGGACGAAATTCAGAAAGTGTTACAAGTGAGTTATAATGGTCTATCACAAGGAGAGCGGGATATATTTCTAGACATTGCATTCTTTTTCAAAGGCGAAGATAAAAATTTCGACACAAGGATACTAAATGCCTGTAATTTCAATGCTACTTGTGGAATAGAAATCCTTGAAGATAAAGCTCTGATAACTATTTCAAAGAGCAATAGGATACAAATGCATGACTTGATACAAAAAATGGCTTTGCATATAGTTGGGGAAAAGCCTAGCCTCCCAGGAAAACGTAGCCGATTGAGGGATATTGAAGAAGTCCGTGATGTACTTGAAAATAGCAAGGGGACTGATGAAGTTAAAGGCATAGCATTAGATTTATCTCAGATAGTAGATTTACAGTTGCAAGCTGACACTTTCAGCGTGATGACTGATCTAAGATTTCTTAGATTATACGTCCCCTTGGGTGAGAAGAGATCAGGTACTGTGCACTATCCTACAGTTCTTATGCCATTTCCCAAAAACCTGAGGTACCTTGAGTGGAATGGATACCCTTTCGAGTCTCTTCCATCATCTTTTTGTGCGAATCTGCTTGTTGAGATTCGCTTGCAGCACAGCAATGTTAAATATATTTGGCATGGGATACAGGAACTTGTGAATTTAGAAGGAATCGACCTGAGCGAATGCAAACAGTTGATAAAGCTCCCAGATTTGTCCAAGGCATCAAAACTTAAATGGTTGTATCTCTCCGGTTGTGAAGATTTATGTGATGTTGAGCCACATATTTTTAAGGACACACTTGTTACTTTGCTGTTGGATAGGTGCAAAAAACTTAAAAGGCTAACAAGTGAGAAGCACTTAAGATCTCTGCAGAACATAAATGTAAATGGCTGCTCAAGTCTCAAGGAGTTTTCGTTGTTCGCTGATTCAATCGAAAGATTAGACTTAAACGATACAGGAATCGAGACATTGAACTTATCAGTCGATAGTCAAAGCAGGCTTGACTGGCTCAACCTAGAAGGTTTAAGACTAAAGAATCTTCCAAATGAATTGTCTTGCCTGAGATCACTTACTAAGCTTTGGATTTCAAACTGCACTACAGTAACTGAACAGAAGTTACGTGTCCTATTTGATGGCCTAGAATCTTTACAAATACTACATTTGAAAGATTGTGGTAACTTGTCTGAACTCCCTGACAACATCAGTTCTTTAGAATCATTATATGAACTAAGACTAGATGGAAGCAGAGTGGAGAAGTTGCCTACAAGCATCCAGTATCTCTCAAAGCTAGAAATCCTATCCTTACAGAATTGCAAGGAGCTTAGTCATCTTCCAAAGCTTACTCAACAGATCAAAGAGTTTCATGCTGACAACTGCACTTCATTGGTGACAGTATCCACTTTGGAGACTTTTTCAGTAATGATGAATGGAAAGGAGAAACACATTTCTTTCAAGAATGACATCAAATTGGGTGGAGCTTCACTCCACTGCATTAAGAAAGATGCCTTATTAACAATGAAGAGTGCTGCATTTCACAATATTTTAGTGAGAAAATACAGTGCGCGAACCCATAGCTACAATTATAACAGTGCTGAGGTTTGTTTACCAGGTAGCAGAGTTCCAAGGCAGTTCAGATACCGAACAACAGATTCCTCCATAACTGTGGACATTTCCTACACGCTGGGATTCATTTTCTCGGTCGTTGTTTCTCCATCACGTGTAATGAATGAGCATGGTGATGGTCCTAAAATCCAATGTCAGTGCTACTCGAAAGATGGCAGAGAAGTGGGGTATGCCTCTATATGGCATCATAAAACAACTACGGATTTGAACTCGGATCATGTTTATGTGTGGTATGATCCGTACCATTCCGACAGCATTCTCGGCGATGTTGAAACCAACGTTTCTTTTGAATTTCGTGTTACAACTAACGAGGGGGAACGTGATGGCTTGTTCACTATGAAAGAGTGTGGGGTCTGCCCGATTTATTTCTCGGAATTTCCTAGGTTTTTAGGCACGATGAATTTGGACAAGGACTTGGAATTGGAGTTGATAGAGGAGCTGTCAAAGGAATTGGGACCAGATTTGGATGAGGCAATGCAATTTGAGTCAGAAACAATTGAAAGCTCTGATGAGGGGGATGGTAATGCTATTGAATCAATTGGAAGAGGTGATGAGAACATAAGCAATGACGTAGAAGCAATTGAAATATCTGATGAGAAAGAAGACAATGGAATAGAATCAGTGGAGAGATCTGATGATAAGGAAGACAAGGGATGCAAAAGCAATGATATAGAAGCAATTGAAAGATCCAAGAGAAGGAAGGTAATGGCAAAGAATCATTGA 3546 0.3957 MSTSSKSHDVFLSFRGEDTRANFAINLYHTLCKKNIQTYIDYNIEKGDDVWPALAKAIQDSDIIVFSENYASSKWCLDELLEILKCRKNHRQVVIPVFYKTDPSDIRHQRGSYKKAFAKYKRELKNNKNYEDKVSKWRDALTEAADLCGWDSGKFRDDYELIENIVKDVWQKQSLKYPHELKGLVEIDKNRKDVESFLNEFPRIGIWGMGGLGKTTIAREMFAKYFAQYDSVCFLEKVREESEKLGLTSVRNKLFSELLKEQITTSDVLGHTFIQRRLGSKNVFIVLDDVKNATQLEYLFEELGDLGPGSKLIITTRDRHALSTRVDKIYNVTKWEFPESLELFSLRAFQQTHPKEGYERLSERAVAYAGGVPLALKVLGLHLRGRNAEFWKSQLDYLENKEEFLDEIQKVLQVSYNGLSQGERDIFLDIAFFFKGEDKNFDTRILNACNFNATCGIEILEDKALITISKSNRIQMHDLIQKMALHIVGEKPSLPGKRSRLRDIEEVRDVLENSKGTDEVKGIALDLSQIVDLQLQADTFSVMTDLRFLRLYVPLGEKRSGTVHYPTVLMPFPKNLRYLEWNGYPFESLPSSFCANLLVEIRLQHSNVKYIWHGIQELVNLEGIDLSECKQLIKLPDLSKASKLKWLYLSGCEDLCDVEPHIFKDTLVTLLLDRCKKLKRLTSEKHLRSLQNINVNGCSSLKEFSLFADSIERLDLNDTGIETLNLSVDSQSRLDWLNLEGLRLKNLPNELSCLRSLTKLWISNCTTVTEQKLRVLFDGLESLQILHLKDCGNLSELPDNISSLESLYELRLDGSRVEKLPTSIQYLSKLEILSLQNCKELSHLPKLTQQIKEFHADNCTSLVTVSTLETFSVMMNGKEKHISFKNDIKLGGASLHCIKKDALLTMKSAAFHNILVRKYSARTHSYNYNSAEVCLPGSRVPRQFRYRTTDSSITVDISYTLGFIFSVVVSPSRVMNEHGDGPKIQCQCYSKDGREVGYASIWHHKTTTDLNSDHVYVWYDPYHSDSILGDVETNVSFEFRVTTNEGERDGLFTMKECGVCPIYFSEFPRFLGTMNLDKDLELELIEELSKELGPDLDEAMQFESETIESSDEGDGNAIESIGRGDENISNDVEAIEISDEKEDNGIESVERSDDKEDKGCKSNDIEAIERSKRRKVMAKNH* 1182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01940 1181 Gene3D Ribonuclease Inhibitor 503 709 IPR032675 -
Rops4g01940 1181 Gene3D Ribonuclease Inhibitor 710 885 IPR032675 -
Rops4g01940 1181 SUPERFAMILY L domain-like 475 864 - -
Rops4g01940 1181 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 705 IPR044974 GO:0006952
Rops4g01940 1181 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 150 IPR035897 -
Rops4g01940 1181 SMART till_3 7 147 IPR000157 GO:0007165
Rops4g01940 1181 Pfam TIR domain 8 180 IPR000157 GO:0007165
Rops4g01940 1181 PRINTS Disease resistance protein signature 203 218 - -
Rops4g01940 1181 PRINTS Disease resistance protein signature 825 841 - -
Rops4g01940 1181 PRINTS Disease resistance protein signature 369 383 - -
Rops4g01940 1181 PRINTS Disease resistance protein signature 277 291 - -
Rops4g01940 1181 Gene3D - 337 420 IPR042197 -
Rops4g01940 1181 Pfam NB-ARC domain 204 417 IPR002182 GO:0043531
Rops4g01940 1181 MobiDBLite consensus disorder prediction 1104 1181 - -
Rops4g01940 1181 ProSiteProfiles TIR domain profile. 6 173 IPR000157 GO:0007165
Rops4g01940 1181 Gene3D - 5 169 IPR035897 -
Rops4g01940 1181 FunFam Disease resistance protein (TIR-NBS-LRR class) 4 175 - -
Rops4g01940 1181 MobiDBLite consensus disorder prediction 1139 1173 - -
Rops4g01940 1181 Gene3D - 170 329 IPR027417 -
Rops4g01940 1181 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 430 IPR027417 -
Rops4g01940 1181 Coils Coil 113 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01940 Rops-Chr4 44912774 44918207 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01940 3 833 WRKY Transcription Factor Family AT4G12020 31.585 1.54e-92 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01940 - - cam:101489032 1365.9