Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01938 ATGTCTTCCTCTTCCAAAAAGTACGATGTGTTCATTAGCTTCAGAGGTGAGGACACCCGAACCAAATTCACAAGCTATCTTTATCGTGCTCTCCGCAAGAAAAGCCTCGAAACATACATTGATTATAATATTGAAAAGGGTGATGAGGTTTGGACCACACTTGCCAAAGCAATCCAGGATTCAGATATGTCTCTCGTCGTTTTCTCAGAAAACTATGCTTCCTCAAAGTGGTGCTTGGATGAACTCCTTAAAATACTCGAATGCAGAAAACATCATGGACAGGTAGTTATACCTGTGTTCCATGAAACGGATCCATCAGATATACGTCACCAGAGAGGGAGTTACGAGAAAGCATTCGCAAAATATGAGAGAGAACTCGAGAGCAGTGAATCCTTTGAAGACAAAGTGTCTCGGTGGAGAGCTGCTCTCACTGAAGCCGCCAATATGTCTGGATGGGACTCCAGTAATTATAGGGACGAGTATGAACTCATCGAAAACATTGTGGAAGATGTTAGGAAGAAGCAGTCCCTGAAGTATCCTAATGAACTGAAAGGCCTTGTCGAAATTGATGAAAATAGGAAATACATTGAATCATTACTGAATAGATGTCCAAGAATTGGAATTTGGGGTATGGGTGGAATGGGAAAGACAACCATAGCCAGACAGACATTTGCCAAACACTTTTCACAATATGACAGTGTATGCTTCTTGGAAAAAGTAAGAGAAGAATCAGAAAAGTTGGGACAAACATCAGTACGTAATAAGCTTCTCAGTGAGCTACTGAAAGAACAAATTACCACATCTGATGCTCTAGGAAGCACATTCATTAAGAGGAGGCTCGGTAGCAAAAAAGTTTTCATTGTACTTGATGATGTAAATGATGATGCAGAATTAGAATATTTGTGTGGAGAACTCGGTGACCTTGGACCACACAGTAAACTCATTATAACAACAAGAGACAGACATACGCTTGTTACAAGAGTTGATGAGATATACGAGGTCCCAAAATGGAAGTTTCCAGAATCTCTAAAGCTTTTTAGCTTAGGAGCCTTCCAGCAAAACCATCCTAAACAGGGTTATGAACATCTCTCAGAAAGGGCAGTTGCATATGCAGGAGGTGTTCCATTAGCTTTGAAAGTTTTAGGTTTACATTTTCGTTCCAGAGATGTTAAATTCTGGAAATCTGAATTGGATTATTTGGAGAACAAGGAGGAATCCTTGGACAAAATTCAGAAAGTGTTGGAAGTGAGCTTTCATGGTTTACCAAAACGAGAGCGAGCAATATTTCTGGACATTGCATTCTTTTTCAAAGATGAAAATAAAGATTTCGTGGTAAGGATACTAGATGCCTGTGGTTCCAACGCTACCAGTGGAATAGAAATCCTTGAAGATAAAGCTCTTATAACTATTTCAAAGAGTAATAGGATACAAATGCACGACTTACTACAAAAAATGGCTTTGCATATAGTTGGGGAAGAATCTAGCCTCGCTGGAAAACGAAGCCGATTGAGGGATATTGAAGAAGTTCGTGATGTACTAAAAAATAGCAAGGGGACCGATGCAGTTGAAAGCATAACATTAGATTTGTCTCAAAAAGTAAATTTACATTTACGAGCTGACGCTTTCAACATGATGACTAATTTAAGATTTCTTAGATTATACGTCCCCTTGGGTAAGAAGACTTCAGGTACTGTCTACCATCCTACAGTTCTTATGCCATTTCCTGAAAACTTGAGGTACCTTGAGTGGAATGGATATCCTTTTAAGTCTCTTCCATCACCTTTTTGTGCTAATCTGCTGGTGGAGATTCGCTTGCAGCACAGCAAAGTTCAATATCTTTGGCACGGGATGCAGGAACTCGTGAATTTAGAGGGAATGGACCTGAGTGAATGCAAACAGTTGATGAAGCTCCCAGATTTGTCTAAGGCATCAAAACTGAAATGGCTGTATCTCTCCGGTTGTGAAAGTTTACGTGTTGTTGACCCATATGTTTTCAAGGACACACTTGTTACTTTGCTATTGGATAGGTGCAAAAAACTGGAAAGGCTAAAAATTGAGAAGCATTTAACATCTCTGGAGAAGATAAATGTATATGGATGCTCAAGTCTTAAGGAATTTTCCTTGTCCTCGGATTCAATCGAAAGGTTGGATTTAAGCAATACCGGAATCGAGACATTGCGCTTATCAGTCGGTAGTCTAAGCAGGCTTGTGTGGCTCAATCTAGAAGGTTTAAGACTACAGAATCTTCCTAATGAATTGTCTGGCCTGATGTCACTTAATGAGCTTTGGATTTCAAACTGCAGTATAGTAACTGAAGACAAGTTACGTGTGCTATTTAATGGTCTGAAATCTTTACAAGTACTATATTTGAAAGATTGTAGTAACTTGTCTGAACTCCCTGACAACATCAGTTCCTTATCATCGTCCTTATATGAATTAAGACTAGATGGAAGCAGCGTGGAGATGTTGCCTGCAAGCATCAAGTCTCTCACAGAGCTAGAAATTCTGTCCTTATCGGATTGTAGGAAGCTTCGTCATCTGCCAGAGCTTCCTCCTGGCATCAAAGAGTTTCATGCTGACAACTGCATGTCATTGGTGACAGTATCCACTTTGAAGACTTTTTCAGAAAAGATGAATGGAAAGGAGAAATACATTTCATTCAAGAATGACACCAAATTGGATGGACCTTCACTCCACTGCAGTGTGAAAGGTGCCTTATTAACAATGAAGAGTGCTGCATTTCACAACATATTAGTGAGAAAATACAGTTCGCAAACCCATAGCTACAATTATAACAGTGCCGAGGTCTGTTTACCTGGAAGCAGAGTTCCAGGGCAGTTCAAATACCAAACAAGAGATTCCTCCATAACTTTGGACCTTCCCTACACGCTGGGATTCATTTTCTCGGTCGTTGTTTCTCCATCATATGAAATGAAGGATCATGGTAGTGGTGCTAAAATCCAATGTCAGTGCTACTCTGAAGATGGTAAAAAGGTGGGATATGAGTCTACATGGCATCAGAAAAATATCACGGATTTGAAGTCGGATCATGTTTATATGTGGTATGATCCATACCATTCTGACAGCATTCTCAGCAATGTTGAAACGAAAATTTCTTTCGAATTCTGTGTTGCAACTGATACCGGGGAACGTGATGGCTTGTTCACTATGAAAGAGTGCGGGGTCTGCCCAATTTATTTCTCAGAATTTCCAAGGTTTTTAAGAATGATGAATTTGAACCCGAACTTGGAATGGGAGTTGACAGAGGAGTTGTCAAAAGAGTTGGGACCAGATTTGTGTGAAGCAATGCAATTTGAGTCAGAAACAATTGAAAGCTCTGATGAGGGGGAAGGTGAAGCCATTGAGTCCATTGGAAGACGTTATGAGAACGAAAGCAATGACGTAGAAGCAATTGAAATATCTGATGAGAGCAAAGGCAATGCCATGGTGCTTGGTCTTCCTTTCAAGTGGTTTTTCCTGTGGCTGTTCCTCAGCATTTTGTTCAGTTTTGTGGACTGGTTAGCAAGAGGAGAATTCTTAGAGGGTGGCATACTTGATGAGAACAAAAGCAATGGCATAGAAGCAATTGAAAGACCTGATGAGAGCAAAGGTGATGATGCCATTGCATCAATTGTTGGAAGACGTGATGAGAACAAAAGCAATGGCATAGAAGCAATTGAAAGATCTGATGAGAAGGAAGACAATGGCATAAAATCAGTGGAGAGATCTGCTGATAAGGACGACAGGGGATTCAAATCGAAGCCGCAGTAA 3771 0.4028 MSSSSKKYDVFISFRGEDTRTKFTSYLYRALRKKSLETYIDYNIEKGDEVWTTLAKAIQDSDMSLVVFSENYASSKWCLDELLKILECRKHHGQVVIPVFHETDPSDIRHQRGSYEKAFAKYERELESSESFEDKVSRWRAALTEAANMSGWDSSNYRDEYELIENIVEDVRKKQSLKYPNELKGLVEIDENRKYIESLLNRCPRIGIWGMGGMGKTTIARQTFAKHFSQYDSVCFLEKVREESEKLGQTSVRNKLLSELLKEQITTSDALGSTFIKRRLGSKKVFIVLDDVNDDAELEYLCGELGDLGPHSKLIITTRDRHTLVTRVDEIYEVPKWKFPESLKLFSLGAFQQNHPKQGYEHLSERAVAYAGGVPLALKVLGLHFRSRDVKFWKSELDYLENKEESLDKIQKVLEVSFHGLPKRERAIFLDIAFFFKDENKDFVVRILDACGSNATSGIEILEDKALITISKSNRIQMHDLLQKMALHIVGEESSLAGKRSRLRDIEEVRDVLKNSKGTDAVESITLDLSQKVNLHLRADAFNMMTNLRFLRLYVPLGKKTSGTVYHPTVLMPFPENLRYLEWNGYPFKSLPSPFCANLLVEIRLQHSKVQYLWHGMQELVNLEGMDLSECKQLMKLPDLSKASKLKWLYLSGCESLRVVDPYVFKDTLVTLLLDRCKKLERLKIEKHLTSLEKINVYGCSSLKEFSLSSDSIERLDLSNTGIETLRLSVGSLSRLVWLNLEGLRLQNLPNELSGLMSLNELWISNCSIVTEDKLRVLFNGLKSLQVLYLKDCSNLSELPDNISSLSSSLYELRLDGSSVEMLPASIKSLTELEILSLSDCRKLRHLPELPPGIKEFHADNCMSLVTVSTLKTFSEKMNGKEKYISFKNDTKLDGPSLHCSVKGALLTMKSAAFHNILVRKYSSQTHSYNYNSAEVCLPGSRVPGQFKYQTRDSSITLDLPYTLGFIFSVVVSPSYEMKDHGSGAKIQCQCYSEDGKKVGYESTWHQKNITDLKSDHVYMWYDPYHSDSILSNVETKISFEFCVATDTGERDGLFTMKECGVCPIYFSEFPRFLRMMNLNPNLEWELTEELSKELGPDLCEAMQFESETIESSDEGEGEAIESIGRRYENESNDVEAIEISDESKGNAMVLGLPFKWFFLWLFLSILFSFVDWLARGEFLEGGILDENKSNGIEAIERPDESKGDDAIASIVGRRDENKSNGIEAIERSDEKEDNGIKSVERSADKDDRGFKSKPQ* 1257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01938 1256 SUPERFAMILY L domain-like 478 867 - -
Rops4g01938 1256 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 152 IPR035897 -
Rops4g01938 1256 SMART till_3 7 149 IPR000157 GO:0007165
Rops4g01938 1256 ProSiteProfiles TIR domain profile. 6 175 IPR000157 GO:0007165
Rops4g01938 1256 Gene3D - 172 330 IPR027417 -
Rops4g01938 1256 Pfam NB-ARC domain 206 416 IPR002182 GO:0043531
Rops4g01938 1256 FunFam Disease resistance protein (TIR-NBS-LRR class) 4 177 - -
Rops4g01938 1256 Pfam C-JID domain 938 1069 IPR045344 -
Rops4g01938 1256 Pfam TIR domain 7 183 IPR000157 GO:0007165
Rops4g01938 1256 Gene3D - 339 422 IPR042197 -
Rops4g01938 1256 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 432 IPR027417 -
Rops4g01938 1256 Gene3D - 4 171 IPR035897 -
Rops4g01938 1256 PRINTS Disease resistance protein signature 205 220 - -
Rops4g01938 1256 PRINTS Disease resistance protein signature 371 385 - -
Rops4g01938 1256 PRINTS Disease resistance protein signature 828 844 - -
Rops4g01938 1256 PRINTS Disease resistance protein signature 279 293 - -
Rops4g01938 1256 MobiDBLite consensus disorder prediction 1195 1256 - -
Rops4g01938 1256 Gene3D Ribonuclease Inhibitor 712 880 IPR032675 -
Rops4g01938 1256 Gene3D Ribonuclease Inhibitor 512 711 IPR032675 -
Rops4g01938 1256 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 707 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01938 Rops-Chr4 44888471 44893479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01938 3 843 WRKY Transcription Factor Family AT4G12020 33.681 6.02e-99 346