Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01935 ATGTCTACCTCAACCAAAAGCTACGATGTGTTCATTAGCTTCAGAGGTGAGGACACCCGAACCAAATTCACAAGCCATCTTTATCGTGCTCTCCGCAAGAAAAACCTCGAAACATACATTGATTATAATCTTCAAAGGGGAGATGAGAAGCAGTCCCTGAAGTATCCTCATGAACTGAAAGGCCTTGTTGAAATTGATGAAAATAGTAAATACATCGAATTGTTAGTGAATGAATTTCCAAGAATTGGAATTTGGGGCATGGGAGGAATGGGAAAGACAACCATAGCCAGAGAGATGTTTGCCAAACACTTCGCACAATATGACAGTGTATGCCTCTTGGAAAAAGTAGGAGAAGAATCAGAAAAGTTGGGAGTAACATCTGTACGTAACAAGCTTCTCAGTGAGCTACTAAAGGAACAAATTACCACATCTGATGTTCTAGGACACACATTTATTCAGAGGAGGCTTGGTAGCAAAAACGTTTTCATTGTACTTGATGATGTGAATGATGCTGTAGAGTTAGAATATTTGTGTGGAGAACTCGGTGACCTTGGACCACAGAGTAGACTCATTATCACTACAAGAGATAAGCATACGCTTAGTTCAAGAGTTAATCAGAAATACAAGGTCCCGGAATGGAAGTTTCCAGAATCTCTTAAGCTTTTTAGCTTAGGAGCCTTCGAGCAAACTTATCCTAAAAAGGATTATGAACGTCTCTCAGAAAGGGCAGTTGCATATACAGGAGGCGTTCCATTAGCTTTAAAAGTTTTGGGTTTACATTTTCGTGACAGAGATATTGAATTCTGGAAATTTGAGTTGAATTATTTGGAGAACAAAGAGGAATCCTGGGACAAAATTCACAAAGTGTTACAAGGGACTGATGCAGTTGAAGGCATAACATTAGATTTGTCTCAAAGAGTAGATCTACATTTGCAAGCTGACACTTTCAACATGATGAATAATTTAAGATTTCTTAGATTATACGTCCCCTTGGGTAAGAAGAGATCAGGTACAGTGTACCATCCTACTACTCTGATGCCATTCTCTGAAAAATTGAGGTACCTTGAGTGGAACGGTTACCCTATTGAGTCTCTTCCATCACCTTTATGTGCTAATTTGCTGGTTGAGATTCGCTTGCCGCACAGTGATGTTGAATATCTTTGGCACGGGATGCAGGAACTTGTGAATTTAGAGGGAATTGACCTGAGTGAATGCAAACAGTTGATGAAGCTCCCAGATTTATCTGGGGCATTAAAACTGAAATGGCTGTATCTCTCCGGTTGTGAAAGTTTATGTGATGTTGAGCCACATGTTTTTAAGGACACACTTGTGACTTTGCTATTGGATAGGTGCAAAAAACTGAAAAGGCTAACATGTGAGAAGCATTTAACATCTCTGGAGAAGATAAATGTATATGGTTGCTCAAGTCTCAAGGAATTTTCGTTGTCCTCTGATTCAATGGAAAGGTTGGATTTAAGCGATACAGGAATCGAAATATTGCACTCATCAATCGGTAGTCTAAGCAGGCTTTTGTGGCTCAATCTAGAAGGTTCAAGACTACAGAATCTACCAAATGAATTGTCTCGCCTGAGTTCACTTACTGAGCTTTGGATTTCAAACTGCAGTATAGTAACTGAAGACAAGTTACGTGTCCTGTTTAAGGGCCTGAAATCTTTACAAATACTATATTTGAAAGATTGTTGTAACTTGTCTGAACTCCCTGACAACATCATTTTATTAACATCATTATATGAATTAAGACTAGATGGAAGCAGATTGGACATGTTGACTACAAGCATCAAGTATCTCCTAAATTTAGAAATTCTGTCCTTAGAGAATTGCAGGAAGCTTCGTCATGTGCCCAAGCTTCCTCCAAACATCAAAGAGTTTTATGCTGACAACTGCACGTCATTGGTGACAGTATCCACTTTGGATACTTTTTCAGAAAAGATGAATGGAAAGGAGAAATACATTTCATTCAAAAATGACATTAAATTGGATCGACCCTCACTCAACTGCATTATGAAAGGTGCCTTACTAACGATGAAGAGTGCTGCGTTTCACAACTTATTGGTGAGAAAATACAGCGCACAAACCCATAGCTACAATTATAACAGTGCTGAGGTTTGTTTAACAGGTAGCAGAGTTCCAAGGCAGTTCAGATACCGAACAACAGATTCCTCCATAACTGTGGACCTTTCCTACACAGTGGGATTCATTTTCTCAGTCGTTGTTTCTCCATCATATGAAATGAAGGAGCATGGTAGTGGTGCTAAAATCCAATGTCAGTGCTACTGGGAAGATGGCAGAAAGGTGGGATATGCGTCTACATGGCATCATAAAACTATTACGGATTTCAACTCTGATCATGTTTATGTGTGGTATGATCCGTACCATTCTGACAGCATTCTCGGCAAAGTTGAAACAGAGGTTTCTTTTGAATTCTGTGTTACAACTAATATGGGGGAACGTGATGGCTTGTTCACTATGAAAGAGTGTGGGGTCTGTCCGATTTATTTCTCGGAATTTCCGAGACGTGATGAGAATGAAAGCAATGGCATAGAAGCAATTGAAAGATCTGATGAGAGCAAAGGTAATGCCATTGAGTCAATTGGAAGACTTGATGAGAACAGAAGCAATGGATTAGAAGCAATTGAAAGATCTGATGAGAGCAAAGTTAATGATGCCATGGAGTCAATTGGAAGACGTGATGAGAACAAAAGCAATGGCATAGAAGCAATTGAAAGATCTGATGAGAAGGAAGACAATGACATAGAATCAGCGAAGAGATCTGTTGATAAGGAAGGCAAGGGATTCAAATCGAAGTTGCGGTCATGGTTGCGGTCACTATTGAAATGTTGCTAA 2865 0.3948 MSTSTKSYDVFISFRGEDTRTKFTSHLYRALRKKNLETYIDYNLQRGDEKQSLKYPHELKGLVEIDENSKYIELLVNEFPRIGIWGMGGMGKTTIAREMFAKHFAQYDSVCLLEKVGEESEKLGVTSVRNKLLSELLKEQITTSDVLGHTFIQRRLGSKNVFIVLDDVNDAVELEYLCGELGDLGPQSRLIITTRDKHTLSSRVNQKYKVPEWKFPESLKLFSLGAFEQTYPKKDYERLSERAVAYTGGVPLALKVLGLHFRDRDIEFWKFELNYLENKEESWDKIHKVLQGTDAVEGITLDLSQRVDLHLQADTFNMMNNLRFLRLYVPLGKKRSGTVYHPTTLMPFSEKLRYLEWNGYPIESLPSPLCANLLVEIRLPHSDVEYLWHGMQELVNLEGIDLSECKQLMKLPDLSGALKLKWLYLSGCESLCDVEPHVFKDTLVTLLLDRCKKLKRLTCEKHLTSLEKINVYGCSSLKEFSLSSDSMERLDLSDTGIEILHSSIGSLSRLLWLNLEGSRLQNLPNELSRLSSLTELWISNCSIVTEDKLRVLFKGLKSLQILYLKDCCNLSELPDNIILLTSLYELRLDGSRLDMLTTSIKYLLNLEILSLENCRKLRHVPKLPPNIKEFYADNCTSLVTVSTLDTFSEKMNGKEKYISFKNDIKLDRPSLNCIMKGALLTMKSAAFHNLLVRKYSAQTHSYNYNSAEVCLTGSRVPRQFRYRTTDSSITVDLSYTVGFIFSVVVSPSYEMKEHGSGAKIQCQCYWEDGRKVGYASTWHHKTITDFNSDHVYVWYDPYHSDSILGKVETEVSFEFCVTTNMGERDGLFTMKECGVCPIYFSEFPRRDENESNGIEAIERSDESKGNAIESIGRLDENRSNGLEAIERSDESKVNDAMESIGRRDENKSNGIEAIERSDEKEDNDIESAKRSVDKEGKGFKSKLRSWLRSLLKCC* 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01935 954 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 290 IPR027417 -
Rops4g01935 954 Pfam TIR domain 8 49 IPR000157 GO:0007165
Rops4g01935 954 MobiDBLite consensus disorder prediction 879 940 - -
Rops4g01935 954 Pfam NB-ARC domain 81 286 IPR002182 GO:0043531
Rops4g01935 954 Gene3D - 53 211 IPR027417 -
Rops4g01935 954 Gene3D Ribonuclease Inhibitor 485 652 IPR032675 -
Rops4g01935 954 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 283 483 IPR044974 GO:0006952
Rops4g01935 954 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 49 IPR035897 -
Rops4g01935 954 SUPERFAMILY L domain-like 301 642 - -
Rops4g01935 954 Gene3D - 215 289 IPR042197 -
Rops4g01935 954 PRINTS Disease resistance protein signature 155 169 - -
Rops4g01935 954 PRINTS Disease resistance protein signature 81 96 - -
Rops4g01935 954 PRINTS Disease resistance protein signature 247 261 - -
Rops4g01935 954 PRINTS Disease resistance protein signature 392 408 - -
Rops4g01935 954 Gene3D Ribonuclease Inhibitor 290 484 IPR032675 -
Rops4g01935 954 Gene3D - 2 52 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01935 Rops-Chr4 44752866 44757844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01935 292 592 WRKY Transcription Factor Family AT4G12020 35.783 7.25e-31 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01935 - - cam:101489032 718.768