Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01930 ATGACACGGGGGAGGATAAGGGCAAGGCTCAGAAGGAGCCATCTTTACACATTTGGTTGCCTTCGGGCTTCTACCACAGAGGAGGCACCTCATCCACTTCAAGGTCCTGGGTACTCAAGAACCGTTTATTGCAACCAGCCTCTGCTACATGAGAAGAGACCTCTGTATTACTGCAGGAATGATATATCCACAACCAAATACAATGTTATTACATTCTTCCCCAAGGCAATTTTTGAACAGTTTCGCAGGGTTGCTAATATTTACTTCCTTTTGGCTGCATGCCTCTCAGCCTCTCCAATTTCACCTTTCAGCCCAGTGAGCATGATTGCTCCTTTGGCATTTGTTGTGGGGCTTAGTATGGCAAAGGAAGCATTGGAAGATTCACGTAGGTTCGTTCAGGATGTCAAAGTTAACCGCAGGAAAGTTAATCACCATAAAGGCAATGGTGTTTTTGGTCCCAGGTCTTGGCAGAACATTATGGTTGGGGATGTGGTAAAAGTAGAAAAGGATCAGTTTTTTCCAGCTGATTTGCTTCTCTTGTCATCAAGTTATGAGGATGGTATATGCTATGTGGAGACTATGAATTTAGATGGTGAGACCAACTTGAAGGTGAAAAGATCTTTGGAGTCTACCTTGACTCTAGATAATGATGAGGTTTTTAAGGATTTCACTGGAACAATACGATGTGAGGACCCAAACCCCAATCTTTACACTTTTGTTGGAAACTTAGAGTATGAGCGCCAGGTTTTTCCTCTTGATCCTAGTCAAATTCTCCTACGAGATTCTAAGCTTAGGAACACTGATTACATCTATGGGGTGGTCATTTTCACCGGTCATGACAGCAAAGTCATGCAGAATTCCACAAGTTCTCCTTCAAAAAGGAGCACAGTAGAAAAGAAGATGGATTATATCATATACACTCTCTTCACTGTCCTTCTTTTGATATCTGTCATTAGTTCCATAGGATTTATCGTCAAGACTAAGTACCAAACCACAAAATGGTGGTACCTACGGCCTGACAATATTGAATACCAGTATGATCCCCAGAAAATTGGAGTGGCTGGGATTAGTCATCTGGTTACTGCACTCATTCTTTATGGATATTTGATACCGATCTCACTTTATGTTTCCATTGAGGTTGTGAAGGTTTTACAGGCAACCTTCATCAACCAAGACATCCAAATGTATGATGAAGACACCGGGACTCCAGCTGATGCCCGGACATCAAATTTGAACGAAGAGTTGGGTCAAGTAGACACTATCCTCTCTGATAAAACTGGCACTTTAACCTGCAATCAGATGGACTTTTTGAAGTGCTCTATTGCTGGTACTGCATATGGTGTGCGTTCTAGTGAAGTTGAACTTGCTGCAGCAAAGCAGATAGCTTCTGATCTTGAGGATCAGGATTCAGATCTCTCCAATTTCCCCATGCCTAAGACTAAAGCGCAAGTTTCATGGGAAGATGTTAGAAGAGCTGAAGAAATTGAACTGGAGACTGTTGTTACTTCCAAAGGTGATGAGGATCAAAGGCATGCCATAAAGGGATTTGGTTTTGAAGACAACCGTCTCATGAATGGCAATTGGTTGAACGAGCCCAATGCCGATGTCATTTTATTGTTCTTCCGAATATTATCAATTTGCCATACTGCCATTCCTGAGCAGAATGAGGAGACAGGTAGTTTTACATATGAAGCTGAGTCACCTGATGAAGGGTCTTTTCTTGTAGCAGCAAGAGAATTTGGCTTTGAGTTTTGTAAAAGGACTCAGTCAAGTATTTTCCTACGTGAAAGAGTTTCTGCTTCAGGGCAAGTGGTTGAAAGGGAATACAAACTCTTGAATCTTCTGGATTTCACGAGTAAAAGAAAGCGTATGTCGGTGATTGTCCGTGATGAGGAGGGCAAAATTTTTCTTCTGTGCAAAGGGGCTGACAGTATCATATTTGATCGTTTGTCAAAGAATGGAAAAACATATTTGGAGGCTACCACCAGACATTTAAATGAGTATGGAGAAGCTGGTTTAAGAACGCTAGCACTGGCTTATAGAATGCTTGATAAGCAAGAGTACTCTACTTGGAACAATGAGTTTCAGAAAGCCAAAGCAGCTGTTGGGGCTGACAGAGAGGCAATGCTTGATCGGGTATCAGATACCATGGAAAGAGAGTTGATTCTTGTTGGGGCTACTGCTGTGGAAGACAAACTGCAGAAAGGGGTTCCTCAATGTATTGATAAACTCGCTCAAGCTGGTCTCAAGATCTGGGTACTAACAGGGGATAAGATGGAAACTGCAATCAACATCGGATTTTCCTGCAGCTTGCTTCGACAGGGCATGAAGCAGATCTGTATAACTACGAATTCAGACTCAGCATCCAATGATGTCAAACAGGCCATCAAGGACAACATTTTGAATCAAATCACCAATGCTTCACAAATGATAAAGCTGGAGAAGGATCCCCATGCTGCCTTTGCACTAATTATTGATGGAAAAACTCTGACATATGCTTTAGAAGATGATTTGAAGCACCAATTTTTGGGATTGGCAGTTGATTGTGCATCTGTCATCTGCTGTCGTGTGTCTCCCAAGCAAAAGGCATTGGTCACTAGATTGGTGAAAGAAGGAACTGGAAAGACCACTCTAGCAATAGGTGATGGTGCGAATGATGTAGGCATGATTCAAGAAGCCGATATTGGTGTTGGAATCAGTGGGGTTGAAGGTATGCAGGCAGTGATGGCTAGTGACTTTGCGATTGCCCAATTTCGATTTTTGGAGCGGCTTCTGGTAGTCCATGGACACTGGTGTTACAAAAGAATTGCGCAAATGATCTGCTATTTCTTCTACAAGAATATAGCATTTGGCCTCACCATCTTCTATTTTGAGGCCTTTACAGGCTTCTCTGGTCAATCGGTCTATGATGACTGGTACATGATATTGTTTAATGTTGTTCTGACATCATTACCCGTCATTTCACTTGGTGTTTTTGAACAAGATGTTCCATCAGAAGTTTGTTTACAGTTTCCTGCACTGTATCAACAAGGACCCAAAAATTTGTTCTTTGACTGGTATAGAATATTGGGATGGATGGGCAATGGTTTATATTCCTCTCTTATCATCTTCTTCCTTATTGTCACCATCTTCTACGACCAAGCATTCCGCGTGGATGGACAGACCGCTGACATGGCTGCTGTTGGAACCACAATGTTCACTTGCATCATCTGGGCAGTGAACTGCCAGATTGCATTGACAATGAGCCATTTTACATGGATTCAGCACCTGTTTGTATGGGGAAGTGTAACCACTTGGTACATCTTTCTCTTTTTATATGGCATGATTTCTCCTGAATATTCAAGGAGTGCCCACCAAATACTGGTTGAAGCTCTTGGTCCTGCACCTATTTATTGGATTGCAACACTTCTAGTTACAATCACATGCATTCTTCCTTATCTTGTCCACATATCCTTCCAAAGATGTTTCAACCCAATGGATCATCATATCATCCAAGAAATCAAGTACTACAAGAAGGATATTGAAGATCAACACATGTGGACAAGGGAACGTTCCAAAGCCAGACAGGAAACCAAGATTGGGTTCACTGCAAGAGTGGAAGCAAAGATAAGGCATTTGAAGGGAAAGCTGCAGAAGAAGCAATCTTCCTTGCCTGTTTTGTCTTCATCGTGA 3672 0.4213 MTRGRIRARLRRSHLYTFGCLRASTTEEAPHPLQGPGYSRTVYCNQPLLHEKRPLYYCRNDISTTKYNVITFFPKAIFEQFRRVANIYFLLAACLSASPISPFSPVSMIAPLAFVVGLSMAKEALEDSRRFVQDVKVNRRKVNHHKGNGVFGPRSWQNIMVGDVVKVEKDQFFPADLLLLSSSYEDGICYVETMNLDGETNLKVKRSLESTLTLDNDEVFKDFTGTIRCEDPNPNLYTFVGNLEYERQVFPLDPSQILLRDSKLRNTDYIYGVVIFTGHDSKVMQNSTSSPSKRSTVEKKMDYIIYTLFTVLLLISVISSIGFIVKTKYQTTKWWYLRPDNIEYQYDPQKIGVAGISHLVTALILYGYLIPISLYVSIEVVKVLQATFINQDIQMYDEDTGTPADARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGVRSSEVELAAAKQIASDLEDQDSDLSNFPMPKTKAQVSWEDVRRAEEIELETVVTSKGDEDQRHAIKGFGFEDNRLMNGNWLNEPNADVILLFFRILSICHTAIPEQNEETGSFTYEAESPDEGSFLVAAREFGFEFCKRTQSSIFLRERVSASGQVVEREYKLLNLLDFTSKRKRMSVIVRDEEGKIFLLCKGADSIIFDRLSKNGKTYLEATTRHLNEYGEAGLRTLALAYRMLDKQEYSTWNNEFQKAKAAVGADREAMLDRVSDTMERELILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFSCSLLRQGMKQICITTNSDSASNDVKQAIKDNILNQITNASQMIKLEKDPHAAFALIIDGKTLTYALEDDLKHQFLGLAVDCASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFAIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTIFYFEAFTGFSGQSVYDDWYMILFNVVLTSLPVISLGVFEQDVPSEVCLQFPALYQQGPKNLFFDWYRILGWMGNGLYSSLIIFFLIVTIFYDQAFRVDGQTADMAAVGTTMFTCIIWAVNCQIALTMSHFTWIQHLFVWGSVTTWYIFLFLYGMISPEYSRSAHQILVEALGPAPIYWIATLLVTITCILPYLVHISFQRCFNPMDHHIIQEIKYYKKDIEDQHMWTRERSKARQETKIGFTARVEAKIRHLKGKLQKKQSSLPVLSSS* 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01930 1223 Gene3D - 593 698 IPR023299 GO:0000166
Rops4g01930 1223 Gene3D - 720 920 IPR023214 -
Rops4g01930 1223 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 32 1177 - -
Rops4g01930 1223 PRINTS P-type cation-transporting ATPase superfamily signature 422 436 - -
Rops4g01930 1223 PRINTS P-type cation-transporting ATPase superfamily signature 880 899 - -
Rops4g01930 1223 Pfam Phospholipid-translocating P-type ATPase C-terminal 908 1158 IPR032630 -
Rops4g01930 1223 CDD P-type_ATPase_APLT_Dnf-like 59 1039 - -
Rops4g01930 1223 FunFam Phospholipid-transporting ATPase 724 920 - -
Rops4g01930 1223 Gene3D - 432 454 IPR023299 GO:0000166
Rops4g01930 1223 Gene3D - 114 289 - -
Rops4g01930 1223 NCBIfam HAD-IC family P-type ATPase 852 961 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops4g01930 1223 Pfam Cation transport ATPase (P-type) 547 651 - -
Rops4g01930 1223 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 523 685 IPR023299 GO:0000166
Rops4g01930 1223 FunFam Phospholipid-transporting ATPase 118 288 - -
Rops4g01930 1223 SUPERFAMILY HAD-like 410 924 IPR036412 -
Rops4g01930 1223 Pfam Phospholipid-translocating ATPase N-terminal 42 109 IPR032631 -
Rops4g01930 1223 SFLD Haloacid Dehalogenase 405 931 - -
Rops4g01930 1223 SUPERFAMILY Calcium ATPase, transduction domain A 147 286 IPR008250 -
Rops4g01930 1223 ProSitePatterns E1-E2 ATPases phosphorylation site. 424 430 IPR018303 -
Rops4g01930 1223 FunFam Phospholipid-transporting ATPase 591 722 - -
Rops4g01930 1223 Coils Coil 448 468 - -
Rops4g01930 1223 NCBIfam phospholipid-translocating P-type ATPase 57 1166 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Rops4g01930 1223 SFLD p-type atpase 405 931 IPR044492 -
Rops4g01930 1223 Gene3D - 419 431 IPR023214 -
Rops4g01930 1223 SUPERFAMILY Calcium ATPase, transmembrane domain M 51 1155 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01930 Rops-Chr4 44654729 44662007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01930 1 1222 Primary Pumps ATPases AT1G17500 75.735 0.0 1951
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01930 K01530 - gmx:100819559 2262.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00369 7 4790312 4797342 Rops4g01930 4 44654729 44662007 PCT