Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01929 ATGGAACCTCGAGTTGGGAACAAGTTCCGTCTTGGTCGGAAAATTGGTAGCGGATCTTTTGGGGAGATCTATCTCGGTACTAATATTCAGACAAATGAAGAGGTTGCAATTAAGCTTGAAAGTGTCAAAACCAAGCACCCTCAATTGTTGTATGAATCCAAGCTGTATAAAATACTACAAGGAGGAAATGGGATCCCAAATTTGAAATGGTTTGGTGTTGAAGGAGAATACAATGTCCTTGTGATGGATTTACTGGGTCCTAGTCTTGAGGATTTGTTCAATTTCTGTAGTCGAAAATTGTCCCTCAAGACTGTTCTTATGCTTGCTGATCAAATGATAAATCGAGTCGAATTTGTTCATTCCAAGTCATTTTTACATCGGGACATCAAGCCAGACAACTTCCTCATGGGTTTAGGGAGGCGAGCAAATCAAGTGTATATCATTGACTTTGGTCTTGCTAAGAAATACAGAGACACCTCTACACATCAGCATATTCCTTACAGAGAGAATAAGAATTTGACAGGAACTGCTAGATATGCCAGTATGAATACTCATCTTGGAATTGAGCAAAGCCGTAGGGATGATTTAGAGTCACTTGGATATGTTCTCATGTATTTTTTAAGAGGAAGTCTTCCTTGGCAGGGATTGAAAGCAGGTAATAAGAAGCAGAAGTATGAGAAAATCAGTGAGAAGAAAGTTTCTACTTCTATTGAGTCTCTCTGTCGTGGCTATCCTTCAGAATTTGCATCATACTTCCATTACTGTCGGTCACTGAGGTTTGACGATAAACCAGATTATGCATATTTGAAAAGACTTCTGCGTGACCTTTTCATTCGTGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAATCTCAAATTACCACTCCTCCTGCCCGTACTATTGGTCCTGCTGCTGGACCAAGTTCTGGTATGCCACCAGTTTCTGCAAATGCCGATGGACAGTCAGGTGGAGAAGATGGTAGGCATGCTGGTTGGTCTTCATCAGATCCTACTCGTAGGAGAAACTCTGGACCCATTGCCAATGATGGAATCTTATCTAGACAAAAGGCCCCACATACAAATGACTTAATTGGATCTAAAGATGCTATGTTGTCAAGTTCTAATTTCTTCCGGTCAAATGGAACTGCAAGGCGAGGTGTTGTCTCAGGCAGCCGTGATGCAGTTGTTGGCAGTGAAACTGAGCCCTCTCGTCCTCCCACTGTGGATCCAAGTACAGGAGCACTTCGTAAAATCTCTGGTGCTCTGAGAAGTTCACCTATCATGTCATCTGAGCAAAACCGAGCATCCTCTGGCAGAAACACTTCAAACATAAAGAACTTGGACTCAACTCTTAGAGGTTTATACCCTTTTTCCCGAACTAAGGAGTGGAATGTTGTATGTGCATTATGTTGA 1434 0.4163 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLESVKTKHPQLLYESKLYKILQGGNGIPNLKWFGVEGEYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGNKKQKYEKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLLRDLFIREGFQFDYVFDWTILKYQQSQITTPPARTIGPAAGPSSGMPPVSANADGQSGGEDGRHAGWSSSDPTRRRNSGPIANDGILSRQKAPHTNDLIGSKDAMLSSSNFFRSNGTARRGVVSGSRDAVVGSETEPSRPPTVDPSTGALRKISGALRSSPIMSSEQNRASSGRNTSNIKNLDSTLRGLYPFSRTKEWNVVCALC* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01929 477 MobiDBLite consensus disorder prediction 304 372 - -
Rops4g01929 477 CDD STKc_CK1_delta_epsilon 8 282 - -
Rops4g01929 477 PANTHER CASEIN KINASE-RELATED 9 382 - -
Rops4g01929 477 MobiDBLite consensus disorder prediction 430 452 - -
Rops4g01929 477 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g01929 477 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g01929 477 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Rops4g01929 477 FunFam Casein kinase I isoform delta-like 1 308 - -
Rops4g01929 477 Gene3D Transferase(Phosphotransferase) domain 1 1 308 - -
Rops4g01929 477 MobiDBLite consensus disorder prediction 387 452 - -
Rops4g01929 477 FunFam Putative Casein kinase I 1 85 - -
Rops4g01929 477 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Rops4g01929 477 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g01929 477 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01929 Rops-Chr4 44648659 44653027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01929 11 281 MAP Kinase Kinase Kinase AT5G50180 26.644 9.26e-13 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Rops4g01929 Pkinase 1.2e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01929 K02218 - gmx:100787808 817.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00370 7 4798908 4803969 Rops4g01929 4 44648659 44653027 PCT