Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01927 ATGTGTTCATTAGCTTCAGGGGTGAGGACACCCGTACTGACTTCACAGACCATCTTTACAATGCTCTCTGCAAGAAAAATATCAAAACATTCATTGATAATAATCTTAGAAGGGGAGAAAAGATTCGCTCCGCACTTGTCGCAGCAATCAAGAACTCACTTATATCCATCATCGTTCTCAGTAGACTATGCTTCCTCAAAGTGGTGCTTGGAAGAACTCCGCGTAATAATCGAATGCAGAAAAAATCATGGACACGTAGTTATACCTGTGTTCTACAAAATAGATCCATCAGACGTACGTAAGCAGACCAGAAGTTACCGGAGAGCATTCGAGACACACGAGAGAGATGCCAGGGACAATAGATCCAAAGAAGAAAAAGTGTCACTGTGGAGAGCTGCTCTCACTGAAGCCGCCAATATATCTGGATGGGACACCAGTACCCATAGGCATGGTTCTCAACTCATCGAGAAAATTGTGAATGATGTTTGGCAAAAGCTGCCCCTGATGTATGAAATAGATGAAAACAGGGAATACATTGAATCGCTACTGAATAAATTTAAAAGAATCGGAATATGGGGCATGGGTGGTGTAGGAAAGACAACCATAGCCAAACAGATGTTTGCTAGACACTTTGCACAATATGACAGCGCATGCTTCTTGGAAAAAGTAAGAGAAGAAACAGAGAAGTTCGGACTAACATCCGTACGAAATAAGCTTTTCAGCGAGCTACTTAAGCGACAAATTACCGCATCTCATGTTCTTGAACCCACATTCATTCAGAGGAGGCTCAGTAGCAACAAAGTTTTCATTGTACTTGATGATGTAAATGATGATGCAGAATTAAAATATTTGTGTGGGGAACTCGGTGACCTTGGACAAGATAGTAGACTCATTATAACAACAAGAGATCGGCATATGCTTATTACAAGAGTTGATGAAATATACGAGGTCCCGAAATGGGAGTTTCCAGAATCTCTAAAGCTTTTTAGCTTAGGAGCCTTGCAGCAAAGCCATCCTAAAGAAGGTTATGAGCATCTCTCATAA 1044 0.4119 MCSLASGVRTPVLTSQTIFTMLSARKISKHSLIIILEGEKRFAPHLSQQSRTHLYPSSFSVDYASSKWCLEELRVIIECRKNHGHVVIPVFYKIDPSDVRKQTRSYRRAFETHERDARDNRSKEEKVSLWRAALTEAANISGWDTSTHRHGSQLIEKIVNDVWQKLPLMYEIDENREYIESLLNKFKRIGIWGMGGVGKTTIAKQMFARHFAQYDSACFLEKVREETEKFGLTSVRNKLFSELLKRQITASHVLEPTFIQRRLSSNKVFIVLDDVNDDAELKYLCGELGDLGQDSRLIITTRDRHMLITRVDEIYEVPKWEFPESLKLFSLGALQQSHPKEGYEHLS* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01927 347 SUPERFAMILY Toll/Interleukin receptor TIR domain 59 143 IPR035897 -
Rops4g01927 347 PRINTS Disease resistance protein signature 188 203 - -
Rops4g01927 347 PRINTS Disease resistance protein signature 262 276 - -
Rops4g01927 347 Pfam NB-ARC domain 185 336 IPR002182 GO:0043531
Rops4g01927 347 Gene3D - 36 170 IPR035897 -
Rops4g01927 347 Gene3D - 171 314 IPR027417 -
Rops4g01927 347 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 345 IPR027417 -
Rops4g01927 347 ProSiteProfiles TIR domain profile. 1 166 IPR000157 GO:0007165
Rops4g01927 347 SMART till_3 29 140 IPR000157 GO:0007165
Rops4g01927 347 Pfam TIR domain 59 174 IPR000157 GO:0007165
Rops4g01927 347 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 41 340 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01927 Rops-Chr4 44638528 44640319 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01927 65 347 WRKY Transcription Factor Family AT4G12020 31.186 2.39e-35 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01927 - - mtr:11419903 352.829