Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01925 ATGTCTTCCTCTCCCAAAAAGTATGATGTGTTCATTAGCTTCAGGGGTGAGGACACCCGTCCTGGCTTCACAAGCCATCTTCACACTGCTCTCTGCAAGCAAAATATCGAAACATTCATTGATAATAATAATCTTAAAAGGGGAGACGAGATTGGGTCTGCACTTGTCAAAGCAATCAAGGATTCACATATATCTGTCGTCGTTTTCTCAGTAAACTATGCTTCTTCAAAGTGGTGCTTGGAAGAACTCCGCCAAATACTGGAATGCAGAAAATATGGAGGACAGGGAACTGATACAGTTGAAGGCATAACATTAGATTTGTCTCAAAAAGTAGATTTACACTTGCGAGCTGAGACATTCAACATGATGCCTAAATTAAGATTTCTTAGATTATATGTTCCCTTGGGTAAGAAGAGATTAGCTAATGTTTCCCCTCCTGAATTCCTTAAACCATGTTCTGATGAATTGAGGTATCTTGAATGGAATGGGTACACTTTGAAGTCTCTTCCACCAAAATTTTGTGTTAAATTTCTTGTTGAGATTCGCATGCCACACAGTCATATTCAAGAACTTTGGCAGGGGACACAGGATCTTGTGAATTTAGAGACAATCGACCTAAGTGAATGCAAACAGTTGACGAAGCTCCCTGATTTATCTAAGGCATTAAAACTTAAATGGGTGTATCTCTCCGGATGTGGAAGTTTGTGTGTTGTTCATCCATCTCTTTTATCCGTGGATACACTTGAGATTTTGATACTGAATAGGTGCACAAAACTTAAGAGTCTTAAAAGTGAAAGACATCTTAGCTGTCTGCAGAAGCTTGATGTCAATGACTGTTCAAGCCTCAACGAATTTTTAGTGTCATCCGATTCAATTGAAACGTTGGATTTAAGCAAGACTAGAGTCAAAAAATTGGACTCATCAATCGGTAGTCTAAGCAAGCTTAAGAGCCTCAATCTAGAAGGATTGAGCCTACAGAATCTTCCAGATGAGTTATCGTGGCTGAAATCTCTTGAGGAGTTTAAGATGTCTAATTGCGGACTAGTTAACAAAAAGAAGCTAGATGTCCTATGTAACGGATTACTATCCTTAAAATTACTTCATTTGAAGGATTGTGATAACTTGTTTGAACTCCCCGACAACATCAACGCCTTATCATCATTATATGAATTAAGGCTTGATGGAAGCAATGTTCAGAAGTTGCCTACAAATATCAAGTTTCTTAAAAATCTGGAGATTCTGTCCTTAGAGAATTGTTGGGGGCTTCAATCTCTACCAGAGCTTCCACCGCTAATCAAAGAGCTTTATGTTGTTGACTGTACCTCATTAGTGACGGTATCCACTTTAAAGACTTTTTCAGTCAAGATGAAAGGACAGGAGAAGAACATTTCATTTAAGAATGGAATGAAATTGGAGGAATTGTCACTCCTCCAGATTATGGAAGGCACCCGATTCACTATGAAGAGTGCTGCAATGCAAAATGTGTTTGTAAGAAGCTTGGGTGTGGATACCAACAGCTATAAGTATAACAGTGTTGGGGTTTGTTTACCAGGAAGTAGTGTCCCAGAGGGGTTCATGTATCGAACCACAGAGTCCTCCATTACCATTAAACTTCCTAGTCGTGACCATCATTCCCACCTGCTAGGCTTCATTTACTCTGTGGTTCTTTCTCCATCCAGTGCAACGGGGCCGTGTCATGCTAAAATCAAATGTATGCGAGATGGTGGAAAGGTGGGAATCGCAACAACATGGCATCACAGTGACATCAGGGAATTGGATTCGGATCATGTTTTGGTATGGTATGATCCATTCCATTGTGACTCAATTCTCGACTGTTCTGCACGAGATGAACCTCTTGAGTTACGTGTTATGACTGATAGTGAGGAAGGTCTCCATATGAAAGAGTTTGGGATCGATCTAATATGTATCTCAGATTCAGAGCTTCCCAATTTCTTGTTGGAAGCAGAAGACTTGGAATCGAAGTTGAGGTTGGAGTTGAGATTAAAAATCCAATTAGCGTTGGACTTGTTTCAAGAATCCAATGGATGTGATTGGGAAGTGGCATCCAAATTATGCCTTGCATTGGAGAATGGAGACGAGTTGGATGGTAGATTGAAATCAGAGTTCGAATCACGATGTAAAGCGATTTCAAGTTCAATTGAGAAAGAACGTGATAGAATACAGGATCAAGAACAAAACTTGAGCGACCGCATTCTCGCTTCGTCTCTCCGCCGCTTCGTCTTCTTCAGCCACTTTGCTCCTTCGCTGCATCCAGTGAGTTTCTCCAGAAGCTTCGACGATGCTACACTGCATTCTCCGGCACGACCTCGAATCTTCCGATTGGAGAGTTTCTTTGCCATGAACGGAAACGAAGCTATGGAAGAGGCGAAGTTGGTGGAGAAAATGGTGTACTGTCTCCGGCGCCGGTGCGTCTCTCCGATCCTTCCCTTGTCGGAGATTCATGGAAGGATGTTTGTGGTGGTGATTGTGCATTCGCCATGGCCATCTAAGGGGCTGGAAGATCCCTCAAGGAGCAAGTATAAACTTATACTAAGCTGTTCACTTATTGTTACTTCTGTGATACCTCCTGAGTTACCAATGGAATTATCAATAGCTGTTAATACTTCTCTGATTGCACTGGCACGGCATGGAATTTTTTGCACAGAACCTTTTCGAATACCATTTGTTGGGAAGGTTGATATATGTTGTTTTGACAAGACTGGGACACTTACATCTGATGACATGGAGTTTTCTGGAGTTGTTGGGTTGACAGAAACTACAGAGTTGGAATCTGATATGAGTAAAGCACCTGTGCGAACAGTAGAAGTCCTGGCTTCTTGCCATGCATTAGTATTTGTTGAGAATAAACTGGTTGGTGACCCTCTTGAGAAGGCTGCTCTTGAGTGCAATTGTGGTTTTGTTGCTCTATATTTCATTTGGGTAGCAAAAGAGCATAGATTGAATGAGCAATGTTGTTGTAGTTTTGGTCTTGGGTACTCCAATTGTCATGACTTGTTCAGTTCAATTTCTAGGTATTTTGTTGTGGATGCCTTGGACTATGCGTATCAAAGTTCTGAGATGATTATGCATCCTGCTCGCATGAAATCAAATCCTTTATAA 3120 0.4115 MSSSPKKYDVFISFRGEDTRPGFTSHLHTALCKQNIETFIDNNNLKRGDEIGSALVKAIKDSHISVVVFSVNYASSKWCLEELRQILECRKYGGQGTDTVEGITLDLSQKVDLHLRAETFNMMPKLRFLRLYVPLGKKRLANVSPPEFLKPCSDELRYLEWNGYTLKSLPPKFCVKFLVEIRMPHSHIQELWQGTQDLVNLETIDLSECKQLTKLPDLSKALKLKWVYLSGCGSLCVVHPSLLSVDTLEILILNRCTKLKSLKSERHLSCLQKLDVNDCSSLNEFLVSSDSIETLDLSKTRVKKLDSSIGSLSKLKSLNLEGLSLQNLPDELSWLKSLEEFKMSNCGLVNKKKLDVLCNGLLSLKLLHLKDCDNLFELPDNINALSSLYELRLDGSNVQKLPTNIKFLKNLEILSLENCWGLQSLPELPPLIKELYVVDCTSLVTVSTLKTFSVKMKGQEKNISFKNGMKLEELSLLQIMEGTRFTMKSAAMQNVFVRSLGVDTNSYKYNSVGVCLPGSSVPEGFMYRTTESSITIKLPSRDHHSHLLGFIYSVVLSPSSATGPCHAKIKCMRDGGKVGIATTWHHSDIRELDSDHVLVWYDPFHCDSILDCSARDEPLELRVMTDSEEGLHMKEFGIDLICISDSELPNFLLEAEDLESKLRLELRLKIQLALDLFQESNGCDWEVASKLCLALENGDELDGRLKSEFESRCKAISSSIEKERDRIQDQEQNLSDRILASSLRRFVFFSHFAPSLHPVSFSRSFDDATLHSPARPRIFRLESFFAMNGNEAMEEAKLVEKMVYCLRRRCVSPILPLSEIHGRMFVVVIVHSPWPSKGLEDPSRSKYKLILSCSLIVTSVIPPELPMELSIAVNTSLIALARHGIFCTEPFRIPFVGKVDICCFDKTGTLTSDDMEFSGVVGLTETTELESDMSKAPVRTVEVLASCHALVFVENKLVGDPLEKAALECNCGFVALYFIWVAKEHRLNEQCCCSFGLGYSNCHDLFSSISRYFVVDALDYAYQSSEMIMHPARMKSNPL* 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01925 1039 Gene3D - 846 899 - -
Rops4g01925 1039 Pfam C-JID domain 516 643 IPR045344 -
Rops4g01925 1039 Gene3D - 1 106 IPR035897 -
Rops4g01925 1039 ProSitePatterns E1-E2 ATPases phosphorylation site. 905 911 IPR018303 -
Rops4g01925 1039 Pfam TIR domain 7 92 IPR000157 GO:0007165
Rops4g01925 1039 Pfam Leucine Rich Repeat 177 196 IPR011713 -
Rops4g01925 1039 NCBIfam HAD-IC family P-type ATPase 845 941 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops4g01925 1039 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 101 286 IPR044974 GO:0006952
Rops4g01925 1039 SUPERFAMILY Calcium ATPase, transmembrane domain M 826 897 IPR023298 -
Rops4g01925 1039 Coils Coil 713 737 - -
Rops4g01925 1039 Gene3D - 900 914 IPR023214 -
Rops4g01925 1039 SUPERFAMILY L domain-like 105 440 - -
Rops4g01925 1039 Gene3D Ribonuclease Inhibitor 291 480 IPR032675 -
Rops4g01925 1039 Gene3D Ribonuclease Inhibitor 107 287 IPR032675 -
Rops4g01925 1039 ProSiteProfiles TIR domain profile. 6 144 IPR000157 GO:0007165
Rops4g01925 1039 SMART till_3 7 136 IPR000157 GO:0007165
Rops4g01925 1039 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 91 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01925 Rops-Chr4 44608200 44621662 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01925 837 968 Primary Pumps ATPases AT5G23630 84.091 3.47e-64 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01925 - - lja:Lj3g3v2666470.1 630.557